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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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BioMart MartView Resource Report Resource Website 10+ mentions |
BioMart MartView (RRID:SCR_010714) | data set, data or information resource, data access protocol, software resource, web service | A web server interface of BioMart software and provides a unified view over disparate data sources that enable bioscientists to retrieve data from one or multiple sources in a simple and efficient way. This MartView web server features seamless data federation making cross querying of data sources in a user friendly and unified way. Data sources include major biomolecular sequence, pathway and annotation databases such as Ensembl, Uniprot, Reactome, HGNC, Wormbase, etc. The web server not only provides access through a web interface, it also supports programmatic access through a Perl API as well as RESTful and SOAP oriented web services. | gold standard | is related to: biomaRt | Ontario Institute for Cancer Research ; Wellcome Trust ; EMBL ; European Union FP6 contract LHSG-CT-2004-512092 |
PMID:19420058 PMID:19144180 |
Free, Public | nlx_89178 | SCR_010714 | MartView, BioMart Central Portal | 2026-07-28 09:42:51 | 10 | ||||||
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IUPHAR/BPS Guide to Pharmacology Resource Report Resource Website 1000+ mentions |
IUPHAR/BPS Guide to Pharmacology (RRID:SCR_013077) | IUPHAR Database, IUPHAR-DB, IUPHAR GPCR, IUPHAR RECEPTOR | narrative resource, data or information resource, database, standard specification, portal | Portal and searchable database of pharmacological information. Information is presented at two levels, the initial view or landing pages for each target family provide expert-curated overviews of the key properties and the available selective ligands and tool compounds. For selected targets, more detailed introductory chapters for each family are available along with curated information on the pharmacological, physiological, structural, genetic and pathophysiogical properties of each target. | pharmacology, drug discovery, portal, guide, physiology, molecular structure, bio.tools, FASEB list |
is listed by: Debian is listed by: bio.tools has parent organization: NC-IUPHAR |
Wellcome Trust | PMID:21087994 | nif-0000-03056, biotools:iuphar-db, r3d100013308 | https://bio.tools/iuphar-db, https://doi.org/10.17616/R31NJMRG | http://www.iuphar-db.org | SCR_013077 | International Union of Pharmacology Database, International Union of Basic and Clinical Pharmacology Database | 2026-07-28 09:43:22 | 2259 | ||||
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Ariba Resource Report Resource Website 100+ mentions |
Ariba (RRID:SCR_015976) | software application, data analysis software, sequence analysis software, software resource, data processing software, software toolkit | Analysis software that identifies antibiotic resistance genes by running local assemblies. It can also be used for MLST calling. | software, analysis, tool, sequence, antibiotic, resistance, assembly, local, mlst |
is listed by: Debian is listed by: OMICtools |
Wellcome Trust 206194; Biotechnology and Biological Sciences Research Council BB/M014088/1 |
PMID:29177089 DOI:10.1099/mgen.0.000131 |
Free, Available for download, Freely available | OMICS_17327 | https://sources.debian.org/src/artemis/ | SCR_015976 | 2026-07-28 09:44:02 | 197 | ||||||
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HumanNet Resource Report Resource Website 100+ mentions |
HumanNet (RRID:SCR_016146) | software application, web application, data analysis software, data or information resource, database, software resource, data processing software | Database of human protein-encoding genes that is constructed by a modified Bayesian integration of 'omics' data from multiple organisms. Each data type is weighted according to how well it links genes that are known to function together in humans, and each interaction has an associated log-likelihood score (LLS) that measures the probability of an interaction representing a true functional linkage between two genes. | probability, gene, protein, encode, statistic, likelihood, network, bayesian, omic, pathway, guilt by association, FASEB list |
has parent organization: University of Texas at Austin; Texas; USA has parent organization: Yonsei University; Seoul; South Korea |
National Research Foundation of Korea (NRF) ; Korean government (MEST) 2010-0017649; POSCO TJ ; U.S. Army Research 58343-MA; Welch F1515; Packard Foundations ; Wellcome Trust 076113; Wellcome Trust 085475 |
Freely available | SCR_016146 | 2026-07-28 09:44:10 | 132 | |||||||||
|
Research Data Management Platform Resource Report Resource Website 1+ mentions |
Research Data Management Platform (RRID:SCR_016268) | RDMP | software application, service resource, data or information resource, data repository, software resource, data management software, storage service resource, software toolkit | Software toolkit which automates the loading, storage, linkage and provision of data sets. It also cleans, transforms and documents provenance meta-data and domain knowledge to make data sets “research ready”. | metadata, reproducibility, anonymization, security, audit, clinical, dataset, translational, research, data, management, catalogue, health, informatics, linkage | has parent organization: University of Dundee; Scotland; United Kingdom | Medical Research Council (MRC) MR/M501633/1; Wellcome Trust WT086113; EU Horizon 2020 633983 |
Free, Available for download | https://hic.dundee.ac.uk/Installers/RDMP/Stable/ | SCR_016268 | 2026-07-28 09:44:16 | 2 | |||||||
|
Cytograph Resource Report Resource Website 1+ mentions |
Cytograph (RRID:SCR_023101) | software application, software resource, data analysis software, data processing software | Software multistage analysis pipeline which progressively discovers cell types or states while mitigating impact of technical artifacts.Used for single cell analysis. | cell types discovery, cell states discovery, single cell analysis | Knut and Alice Wallenberg Foundation ; Swedish Foundation for Strategic Research ; Wellcome Trust ; Swedish Research Council ; European Research Council ; Ollie and Elof Ericssons Foundation ; Ake Wiberg Foundation |
PMID:30096314 | Free, Freely available | SCR_023101 | 2026-07-28 09:45:51 | 3 | |||||||||
|
TriTrypDB Resource Report Resource Website 500+ mentions |
TriTrypDB (RRID:SCR_007043) | TriTrypDB | service resource, data or information resource, data analysis service, database, data access protocol, software resource, production service resource, web service, analysis service resource | An integrated genomic and functional genomic database providing access to genome-scale datasets for kinetoplastid parasites, and supporting a variety of complex queries driven by research and development needs. Currently, TriTrypDB integrates datasets from Leishmania braziliensis, L. infantum, L. major, L. tarentolae, Trypanosoma brucei and T. cruzi. Users may examine individual genes or chromosomal spans in their genomic context, including syntenic alignments with other kinetoplastid organisms. Data within TriTrypDB can be interrogated utilizing a sophisticated search strategy system that enables a user to construct complex queries combining multiple data types. All search strategies are stored, allowing future access and integrated searches. ''''User Comments'''' may be added to any gene page, enhancing available annotation; such comments become immediately searchable via the text search, and are forwarded to curators for incorporation into the reference annotation when appropriate. TriTrypDB provides programmatic access to its searches, via REST Web Services. The result of a web service request is a list of records (genes, ESTs, etc) in either XML or JSON format. REST services can be executed in a browser by typing a specific URL. TriTrypDB and its continued development are possible through the collaborative efforts between EuPathDB, GeneDB and colleagues at the Seattle Biomedical Research Institute (SBRI). | kinetoplastid parasite, pathogen, genome, gene chromosome, annotation, trypanosomatidae, parasite, blast, bio.tools, FASEB list |
is listed by: Debian is listed by: bio.tools is related to: GeneDB is related to: GeneDB Lmajor is related to: GeneDB Tbrucei has parent organization: Eukaryotic Pathogen Database Resources |
Bill and Melinda Gates Foundation 50097; Wellcome Trust WT085822MA; Wellcome Trust WT085775/Z/08/Z |
PMID:19843604 | Public - please cite. Much of the data in TriTrypDB is provided by independent researchers. Please cite them if you use their data. | nlx_152064, biotools:tritrypdb, r3d100011479 | https://bio.tools/tritrypdb, https://doi.org/10.17616/R3J05N | SCR_007043 | 2026-07-28 09:41:49 | 670 | |||||
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Enzyme Structures Database Resource Report Resource Website 1+ mentions |
Enzyme Structures Database (RRID:SCR_007125) | EC->PDB, EC-PDB | image collection, data or information resource, database | Database of known enzyme structures that have been deposited in the Protein Data Bank (PDB). The enzyme structures are classified by their E.C. number of the ENZYME Data Bank. Browse the classification hierarchy or enter an EC number or search-string. There are currently 45,638 PDB-enzyme entries in the PDB (as at 23 February, 2013) involving 38,109 separate PDB files - some files having more than one E.C. number associated with them. | enzyme, structure, gold standard |
is related to: PDBsum is related to: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) has parent organization: European Bioinformatics Institute |
Wellcome Trust | nlx_30980 | SCR_007125 | 2026-07-28 09:41:41 | 3 | ||||||||
|
Gene3D Resource Report Resource Website 100+ mentions |
Gene3D (RRID:SCR_007672) | Gene3D | service resource, data or information resource, data repository, database, data access protocol, software resource, web service, storage service resource | A large database of CATH protein domain assignments for ENSEMBL genomes and Uniprot sequences. Gene3D is a resource of form studying proteins and the component domains. Gene3D takes CATH domains from Protein Databank (PDB) structures and assigns them to the millions of protein sequences with no PDB structures using Hidden Markov models. Assigning a CATH superfamily to a region of a protein sequence gives information on the gross 3D structure of that region of the protein. CATH superfamilies have a limited set of functions and so the domain assignment provides some functional insights. Furthermore most proteins have several different domains in a specific order, so looking for proteins with a similar domain organization provides further functional insights. Strict confidence cut-offs are used to ensure the reliability of the domain assignments. Gene3D imports functional information from sources such as UNIPROT, and KEGG. They also import experimental datasets on request to help researchers integrate there data with the corpus of the literature. The website allows users to view descriptions for both single proteins and genes and large protein sets, such as superfamilies or genomes. Subsets can then be selected for detailed investigation or associated functions and interactions can be used to expand explorations to new proteins. The Gene3D web services provide programmatic access to the CATH-Gene3D annotation resources and in-house software tools. These services include Gene3DScan for identifying structural domains within protein sequences, access to pre-calculated annotations for the major sequence databases, and linked functional annotation from UniProt, GO and KEGG., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | protein domain, protein, protein superfamily, hidden markov model, structural domain, genome, sequence, domain assignments, protein structure, bio.tools, FASEB list |
is listed by: bio.tools is listed by: Debian has parent organization: University College London; London; United Kingdom |
NIH ; Wellcome Trust ; European Union FP6 ENFIN LSHG-CT-2003-503265; European Union FP6 ENFIN LSHG-CT-2004-512092; European Union FP6 ENFIN LSHG-CT-2005-518254; DOE DE-AC02-065CH11357 |
PMID:19906693 PMID:18032434 |
THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-02877, biotools:gene3d | https://bio.tools/gene3d | SCR_007672 | Gene3D - Structures assigned to Genomes | 2026-07-28 09:42:09 | 272 | ||||
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Human Ageing Genomic Resources Resource Report Resource Website 50+ mentions |
Human Ageing Genomic Resources (RRID:SCR_007700) | HAGR | data or information resource, database, software toolkit, software resource | Collection of databases and tools designed to help researchers study the genetics of human ageing using modern approaches such as functional genomics, network analyses, systems biology and evolutionary analyses. A major resource in HAGR is GenAge, which includes a curated database of genes related to human aging and a database of ageing- and longevity-associated genes in model organisms. Another major database in HAGR is AnAge. Featuring over 4,000 species, AnAge provides a compilation of data on aging, longevity, and life history that is ideal for the comparative biology of aging. GenDR is a database of genes associated with dietary restriction based on genetic manipulation experiments and gene expression profiling. Other projects include evolutionary studies, genome sequencing, cancer genomics, and gene expression analyses. The latter allowed them to identify a set of genes commonly altered during mammalian aging which represents a conserved molecular signature of aging. Software, namely in the form of scripts for Perl and SPSS, is made available for users to perform a variety of bioinformatic analyses potentially relevant for studying aging. The Perl toolkit, entitled the Ageing Research Computational Tools (ARCT), provides modules for parsing files, data-mining, searching and downloading data from the Internet, etc. Also available is an SPSS script that can be used to determine the demographic rate of aging for a given population. An extensive list of links regarding computational biology, genomics, gerontology, and comparative biology is also available. | gene, gerontology, human, model, senescence, genomics, longevity, genetics, perl, spss, demographic analysis, genome, evolution, gene expression, model organism, human aging, dietary restriction, genetic manipulation |
has parent organization: University of Liverpool; Liverpool; United Kingdom is parent organization of: anage is parent organization of: GenAge |
Aging, Cancer | Ellison Medical Foundation ; Wellcome Trust ME050495MES; European Union FP7 Health Research HEALTH-F4-2008-202047 |
PMID:23193293 | GNU General Public License, Creative Commons Attribution v3 Unported License | nif-0000-02938, r3d100011871 | https://doi.org/10.17616/R34W81 | SCR_007700 | 2026-07-28 09:41:54 | 67 | ||||
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Gaussian-Copula Mutual Information (GCMI) Resource Report Resource Website 1+ mentions |
Gaussian-Copula Mutual Information (GCMI) (RRID:SCR_016450) | GCMI | software application, software resource, data analysis software, data processing software | Software package of functions for calculating mutual information and other information theoretic quantities using a parametric Gaussian copula. | gaussian, copula, parametric, equation, calculation, python, matlab, repository, statistic | Wellcome Trust 098433; Wellcome Trust 107802; UK Biotechnology and Biological Sciences Research Council (BBSRC) BB/J018929/1; UK Biotechnology and Biological Sciences Research Council (BBSRC) BB/D01400X1; UK Biotechnology and Biological Sciences Research Council (BBSRC) BB/M009742/1; UK Biotechnology and Biological Sciences Research Council (BBSRC) BB/L027534/1; European Research Council 646657 |
Free, Available for download | SCR_016450 | gcmi : Gaussian-Copula Mutual Information, Gaussian-Copula Mutual Information | 2026-07-28 09:44:14 | 9 | ||||||||
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PALM Resource Report Resource Website 10+ mentions |
PALM (RRID:SCR_017029) | PALM | software application, software resource, data analysis software, data processing software | Software tool for inference using permutation methods. Requires Matlab or Octave. Can be executed from inside either environment, or directly from the shell and can be called from scripts. For users who are familiar with statistics and willing to use experimental analysis tools. | statistics, permutation, bootstrap, non parametric, combination, inference |
requires: MATLAB is a plug in for: FSL |
GlaxoSmithKline ; Marie Curie ITN ; Medical Research Council ; Wellcome Trust ; NIBIB R01 EB015611; MRC G0900908; Brazilian National Research Council |
PMID:24530839 PMID:26074200 DOI:10.1002/hbm.23115 PMID:27288322 |
Free, Available for download, Freely available | https://github.com/andersonwinkler/PALM | SCR_017029 | PALM, Permutation Analysis of Linear Models | 2026-07-28 09:44:30 | 47 | |||||
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Physiome Model Repository Resource Report Resource Website 1+ mentions |
Physiome Model Repository (RRID:SCR_017374) | PMR | service resource, data or information resource, data repository, model, dynamic model, storage service resource | Repository of mainly CellML models powered by collection of software tools and libraries with PMR2 software suite as core power. Third party integration suites are RICORDO, Virtuoso, BiVeS/BudHat, OpenCOR, CombineArchive Web, WebCAT, Morre/MaSyMoS. | Physiology, repository, CellML, cell, model, file, metadata, PMR2 |
is used by: SPARC Portal is related to: CellML is related to: International Union of Physiological Sciences: Physiome Project |
British Heart Foundation ; Maurice Wilkins Centre for Molecular Biodiscovery ; Virtual Physiological Human Network of Excellence ; Wellcome Trust ; Auckland Bioengineering Institute |
DOI:10.1093/bioinformatics/btq723 | Free, Available for download, Freely available | http://www.cellml.org/tools/pmr/, http://models.cellml.org/ | SCR_017374 | Physiome Repository, PMR2 | 2026-07-28 09:44:33 | 5 | |||||
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VasoTracker Resource Report Resource Website 1+ mentions |
VasoTracker (RRID:SCR_017233) | software application, data analysis software, software resource, data processing software, data acquisition software | Open source and stand alone software for assessing vascular reactivity. Used in pressure myograph system. | vascular, reactivity, pressure, myograph, system |
is related to: Durham University; Durham; England has parent organization: University of Strathclyde; Glasgow; United Kingdom |
Wellcome Trust ; British Heart Foundation |
PMID:30846942 | Free, Available for download, Freely available | https://github.com/VasoTracker/VasoTracker | SCR_017233 | 2026-07-28 09:44:28 | 5 | |||||||
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Accessible Resource for Integrated Epigenomics Studies Resource Report Resource Website 10+ mentions |
Accessible Resource for Integrated Epigenomics Studies (RRID:SCR_017492) | data or information resource, data access protocol, software resource, web service, topical portal, portal | Portal for epigenomic information on range of human tissues, including DNA methylation data on peripheral blood at multiple time points across lifecourse. Provides web interface to browse methylation variation between groups of individuals and across time. | Epigenomic, human, tissue, DNA, methylation, data, peripheral, blood | BBSRC ; Medical Research Council ; Wellcome Trust ; University of Bristol |
PMID:25991711 | Free, Freely available | http://www.bristol.ac.uk/alspac/ | SCR_017492 | ARIES | 2026-07-28 09:44:34 | 33 | |||||||
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ISRCTN Registry Resource Report Resource Website 500+ mentions |
ISRCTN Registry (RRID:SCR_006087) | narrative resource, data or information resource, database, standard specification, international standard specification | A primary clinical trial registry which houses proposed, ongoing, and completed clinical research studies. An ISRCTN is a simple numeric system for the unique identification of randomized controlled trials worldwide. The registry provides content validation and curation and the unique identification number necessary for publication. Submitted studies range from cancer to urological diseases. | clinical trial, unique identifier, observational trial, interventional trial, health, registry, clinical, trial, FASEB list |
is used by: Current Controlled Trials is related to: Current Controlled Trials has parent organization: Current Controlled Trials |
Department of Health UK ; Medical Research Council ; Wellcome Trust ; Canadian Institutes of Health Research |
Public | nlx_151501, r3d100013307 | http://www.isrctn.org, https://doi.org/10.17616/R31NJMRF | SCR_006087 | International Standard Randomised Controlled Trial Number Registry, International Standard Randomized Controlled Trial Number Register | 2026-07-28 09:41:31 | 744 | ||||||
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Europe PubMed Central Resource Report Resource Website 500+ mentions |
Europe PubMed Central (RRID:SCR_005901) | Europe PMC, UKPMC | bibliography, data or information resource, database, data access protocol, software resource, web service | Free access to biomedical literature resources including all of PubMed and PubMed Central, agricultural abstracts (from AGRICOLA), over 4 million international life science patents abstracts, National Health Service (NHS) clinical guidelines, and is supplemented with Chinese Biological Abstracts and the Citeseer database. As well as powerful search of abstracts and full text articles, it also includes: * article citations and sort order based on citation count * data citations mined from full text articles * links to and from related databases and institutional repositories * a tool to create bibliographies linked to your ORCID * named entity recognition of keywords and text-mining-based applications showcased in Europe PMC Labs * Tools for recipients of grants from one of the Europe PMC funders to deposit full-text manuscripts and link them to those specific grants. * Web services for programmatic access to all the above bibliographic information and 50,000 grants. * Search by publication date, relevance, or the number of times an article has been cited. * Links to public databases such as UniProt, Protein Data Bank (PDBe), and the European Nucleotide Archive (ENA) are provided. * Through textmining technologies, you can highlight and browse keywords such as gene names, organisms and diseases. * Search 40,000 biomedical research grants awarded to the 18,000 PIs supported by the Europe PMC funders. * Roadtest new tools based on Europe PMC content in Europe PMC labs. * In Europe PMC plus, PIs supported by the Europe PMC funders can link grants to publication information, view article citation and download statistics, and submit manuscripts. | biomedical, literature, publication, health, life science, patent, clinical guideline, grant, text mining, author identification, archiving, open access, gold standard, bio.tools, bio.tools, FASEB list |
uses: EvidenceFinder uses: BioLexicon is listed by: FORCE11 is listed by: Debian is listed by: bio.tools is related to: PubMed is related to: PubMed Central is related to: AGRICOLA is related to: ORCID - Open Researcher and Contributor ID is related to: EvidenceFinder has parent organization: European Bioinformatics Institute has parent organization: Mimas has parent organization: National Centre for Text Mining is parent organization of: EvidenceFinder |
Wellcome Trust WT098231 | PMID:21062818 | Free, The community can contribute to this resource | nlx_149472, biotools:europe_pmc, biotools:ukpmc | https://bio.tools/ukpmc, https://bio.tools/europe_pmc | http://ukpmc.ac.uk/ | SCR_005901 | UK PubMed Central | 2026-07-28 09:41:22 | 505 | |||
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Embryo Imaging Resource Report Resource Website 1+ mentions |
Embryo Imaging (RRID:SCR_006329) | Embryo Imaging | image collection, data or information resource, data set, video resource | Collection of high resolution images and movies of mouse and human embryos produced using high resolution episcopic microscopy (HREM). Each data set is a series of block-face images generated during sectioning through an entire embryo, typically cut at 2-3 micrometers. Datasets are organized by approximate developmental stage and each embryo has been assigned a specimen ID (SID) for identification. This is an ongoing project funded by the Wellcome Trust to provide comprehensive imaging of normal and mutant mouse embryos that will complement the standard anatomical texts and form the basis for systematic phenotyping. * Movies: A 3D reconstruction shows each embryo, and lower resolution movies created through each orthogonal plane enable you to quickly review the data set. * Image Stacks: In the stack viewer, you can step through the images in sequence, zoom in to see fine details and adjust the image contrast. * NEW: Embryo Comparison: Two image stacks can now be compared in the stack viewer. | embryo, embryonic mouse, movie, high resolution image stack, image stack, comparison, high resolution episcopic microscopy, 3d reconstruction, imaging | Normal, Mutant | Wellcome Trust | Creative Commons Attribution-NonCommercial-ShareAlike License | nlx_152031 | SCR_006329 | 2026-07-28 09:41:33 | 4 | |||||||
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PomBase Resource Report Resource Website 100+ mentions |
PomBase (RRID:SCR_006586) | PomBase | data or information resource, service resource, database | Model organism database that provides organization of and access to scientific data for the fission yeast Schizosaccharomyces pombe. PomBase supports genomic sequence and features, genome-wide datasets and manual literature curation. PomBase also provides a community hub for researchers, providing genome statistics, a community curation interface, news, events, documentation, mailing lists, and welcomes data submissions. | fission yeast, gene ontology, genome sequence, schizosaccharomyces pombe (4896), schizosaccharomyces pombe, dna, protein, cosmic assembly, intron, go, chromosome, telomere, centromere, mating region, data mapping, model organism, genome, bio.tools, FASEB list |
is used by: NIF Data Federation is listed by: 3DVC is listed by: Debian is listed by: bio.tools is related to: AmiGO is related to: GeneDB Spombe has parent organization: University of Cambridge; Cambridge; United Kingdom has parent organization: University College London; London; United Kingdom is parent organization of: Fission Yeast Phenotype Ontology is parent organization of: Pompep |
Wellcome Trust WT090548MA | PMID:22039153 | Public, Acknowledgement requested | biotools:pombase, nlx_144356, r3d100011478 | https://bio.tools/pombase, https://doi.org/10.17616/R3NS78 | http://www.sanger.ac.uk/Projects/S_pombe/ | SCR_006586 | Schizosaccharomyces pombeGenome Sequencing Project | 2026-07-28 09:41:35 | 362 | |||
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European Nucleotide Archive (ENA) Resource Report Resource Website 1000+ mentions |
European Nucleotide Archive (ENA) (RRID:SCR_006515) | ENA | service resource, data or information resource, data repository, database, storage service resource | Public archive providing a comprehensive record of the world''''s nucleotide sequencing information, covering raw sequencing data, sequence assembly information and functional annotation. All submitted data, once public, will be exchanged with the NCBI and DDBJ as part of the INSDC data exchange agreement. The European Nucleotide Archive (ENA) captures and presents information relating to experimental workflows that are based around nucleotide sequencing. A typical workflow includes the isolation and preparation of material for sequencing, a run of a sequencing machine in which sequencing data are produced and a subsequent bioinformatic analysis pipeline. ENA records this information in a data model that covers input information (sample, experimental setup, machine configuration), output machine data (sequence traces, reads and quality scores) and interpreted information (assembly, mapping, functional annotation). Data arrive at ENA from a variety of sources including submissions of raw data, assembled sequences and annotation from small-scale sequencing efforts, data provision from the major European sequencing centers and routine and comprehensive exchange with their partners in the International Nucleotide Sequence Database Collaboration (INSDC). Provision of nucleotide sequence data to ENA or its INSDC partners has become a central and mandatory step in the dissemination of research findings to the scientific community. ENA works with publishers of scientific literature and funding bodies to ensure compliance with these principles and to provide optimal submission systems and data access tools that work seamlessly with the published literature. ENA is made up of a number of distinct databases that includes the EMBL Nucleotide Sequence Database (Embl-Bank), the newly established Sequence Read Archive (SRA) and the Trace Archive. The main tool for downloading ENA data is the ENA Browser, which is available through REST URLs for easy programmatic use. All ENA data are available through the ENA Browser. Note: EMBL Nucleotide Sequence Database (EMBL-Bank) is entirely included within this resource. | analysis, bioinformatics, dna, nucleotide, sequencing, web service, rna, molecular biology, nucleotide sequence, protein, gene expression, gene, genome, biochemistry, molecular structure, metabolite, protein binding, chemogenomics, gold standard |
is used by: BioSample Database at EBI is recommended by: NIDDK Information Network (dkNET) is recommended by: National Library of Medicine is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is listed by: 3DVC is listed by: re3data.org is listed by: OMICtools is related to: NCBI Sequence Read Archive (SRA) is related to: ENA Sequence Version Archive is related to: VBASE2 is related to: DDBJ Sequence Read Archive is related to: ISA Infrastructure for Managing Experimental Metadata is related to: DNA DataBank of Japan (DDBJ) is related to: DNA DataBank of Japan (DDBJ) is related to: NCBI is related to: INSDC is related to: INSDC is related to: NCBI Assembly Archive Viewer has parent organization: European Bioinformatics Institute is parent organization of: ENA Sequence Search works with: Eutherian comparative genomic analysis protocol |
EMBL ; Wellcome Trust ; European Union |
PMID:20972220 | Public, The community can contribute to this resource, Acknowledgement requested | OMICS_01029, r3d100010527, nif-0000-32981 | http://www.ebi.ac.uk/embl/, https://doi.org/10.17616/R3HW3J | SCR_006515 | ENA, European Nucleotide Archive | 2026-07-28 09:41:36 | 1272 |
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Data set from Kravitz, Owen and Kretizer's 2012 paper "Optogenetic identification of striatal projection neuron subtypes during in vivo recordings."
