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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
HERB Resource Report Resource Website 100+ mentions |
HERB (RRID:SCR_026468) | data or information resource, database | High-throughput experiment- and reference-guided database of traditional Chinese medicine. | traditional Chinese medicine, experiment- and reference-guided database, | China Postdoctoral Innovative Talent Foundation ; National Natural Science Foundation of China ; Zhejiang Provincial Natural Science Foundation of China |
PMID:33264402 | Free, Freely available, | SCR_026468 | 2026-08-29 11:34:31 | 284 | |||||||||
|
ROGUE Resource Report Resource Website 1+ mentions |
ROGUE (RRID:SCR_026568) | data analysis software, data processing software, software application, software resource, source code | Software tool as entropy-based metric for assessing purity of single cell populations. Used to accurately quantify purity of identified cell clusters. | Assessing purity of single cell population, entropy-based metric, quantify purity, identified cell clusters, | National Natural Science Foundation of China ; Peking University |
PMID:32572028 | Free, Available for download, Freely available | SCR_026568 | 2026-08-29 11:34:34 | 3 | |||||||||
|
CSOmap Resource Report Resource Website 1+ mentions |
CSOmap (RRID:SCR_027636) | software application, software resource, source code | Software tool for reconstruction of cell spatial organization from single-cell RNA sequencing data based on ligand-receptor mediated self-assembly. Infers cellular spatial organization from scRNA-seq by modeling ligand–receptor-mediated self-assembly. It constructs 3D pseudo-space and quantifies cell–cell interactions for downstream visualization and hypothesis testing. | Infer cellular spatial organization from scRNA-seq, modeling ligand–receptor-mediated self-assembly, reconstruction of cell spatial organization, single-cell RNA sequencing data, construct 3D pseudo-space, quantify cell–cell interactions, | National Natural Science Foundation of China ; Peking University |
PMID:32541867 | Free, Available for download, Freely available | SCR_027636 | 2026-08-29 11:35:10 | 1 | |||||||||
|
Cancer Treatment Response gene signature DataBase Resource Report Resource Website 1+ mentions |
Cancer Treatment Response gene signature DataBase (RRID:SCR_027950) | CTR_DB | data or information resource, database | Data resource for clinical transcriptomes with cancer treatment response, and meanwhile supports various data analysis functions, providing insights into the molecular determinants of drug resistance. CTR-DB 2.0 is updated cancer clinical transcriptome resource, expanding primary drug resistance and newly adding acquired resistance datasets and enhancing the discovery and validation of predictive biomarkers. | clinical transcriptomes, cancer treatment response, primary drug resistance, predictive biomarkers, | National Key Research and Development Program of China ; National Natural Science Foundation of China |
PMID:39494527 | Free, Freely available, | SCR_027950 | , CTR-DB 1.0, CTR-DB 2.0 | 2026-08-29 11:35:17 | 5 | |||||||
|
NuHTC Resource Report Resource Website |
NuHTC (RRID:SCR_028227) | NuHTC | software application, software resource, source code | Software nuclei instance segmentation and classification framework based on hybrid task cascade. | Hybrid task cascade, nuclei instance segmentation and classification, | Beijing Natural Science Foundation ; National Key Research and Development Program of China ; National Natural Science Foundation of China |
PMID:40294567 | Free, Available for download, Freely available | SCR_028227 | , Nuclei Hybrid Task Cascade, NuHTC nuclear segmentation pipeline | 2026-08-29 11:35:38 | 0 |
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Data set from Kravitz, Owen and Kretizer's 2012 paper "Optogenetic identification of striatal projection neuron subtypes during in vivo recordings."
