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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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miRGator Resource Report Resource Website 50+ mentions |
miRGator (RRID:SCR_007793) | miRGator | database, data or information resource | Database of compiled, public, deep sequencing miRNA data and several novel tools to facilitate exploration of massive data. The miR-seq browser supports users to examine short read alignment with the secondary structure and read count information available in concurrent windows. Features such as sequence editing, sorting, ordering, import and export of user data are of great utility for studying iso-miRs, miRNA editing and modifications. miRNA����??target relation is essential for understanding miRNA function. Coexpression analysis of miRNA and target mRNAs, based on miRNA-seq and RNA-seq data from the same sample, is visualized in the heat-map and network views where users can investigate the inverse correlation of gene expression and target relations, compiled from various databases of predicted and validated targets. | genome, functional annotation, microrna, expression profile, mir-seq, mirna-mrna target relation, expression correlation, FASEB list |
is listed by: OMICtools has parent organization: Korea Research Institute of Bioscience and Biotechnology; Daejeon; South Korea |
Korean Rural Development Administration 20070401034010; Korean Ministry of Science and Technology ; Ministry of Education and Human Resources Development |
PMID:23193297 PMID:21062822 PMID:17942429 |
nif-0000-03136, OMICS_00363 | http://203.255.191.19/MEXWebApp/, http://genome.ewha.ac.kr/miRGator/miRGator.html | SCR_007793 | miRGator: an integrated system for functional annotation of microRNAs | 2026-07-25 12:11:48 | 50 | |||||
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IPD-HPA - Human Platelet Antigens Resource Report Resource Website 1+ mentions |
IPD-HPA - Human Platelet Antigens (RRID:SCR_007747) | database, data or information resource | A centralised repository for the data which define the human platelet antigens (HPA). Alloantibodies against human platelet antigens are involved in neonatal alloimmune thrombocytopenia, post-transfusion purpura and refractoriness to random donor platelets. The Human Platelet Antigen (HPA) nomenclature system was adopted in 1990 to overcome problems with the previous nomenclature. Since then more antigens have been described and meanwhile the molecular basis of many has been resolved, and the nomenclature was revised in 2003. | polymorphism, immuno-polymorphism, alloantigen |
is listed by: 3DVC has parent organization: European Bioinformatics Institute |
nif-0000-03040 | SCR_007747 | Immuno polymorphism database, IPD-HPA | 2026-07-25 12:11:50 | 5 | |||||||||
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MPDB - Molecular Probe Database Resource Report Resource Website |
MPDB - Molecular Probe Database (RRID:SCR_007808) | MPDB | database, data or information resource | A database containing information on ca. 4300 synthetic oligonucleotides with a sequence of up to 100 nucleotides. Data are mainly taken from the literature and are encoded on the basis of controlled vocabularies. The probes target 821 different genes, of which 691 human and 112 viral. The probes can be used for genetic polymorphisms study (1944), human inherited disease diagnosis (834), cancer diagnosis (517), infectious disease diagnosis (517), neurologic disease diagnosis (72), autoimmune disease diagnosis (40). Oligonucleotides are described on the basis of: name, oligo type (primer, probe, antisense), nucleotide sequence, amino acid sequence (if part of a coding region), target gene and related infos (localization within the gene and recognized variants or specificities), applications, methods, technical notes, complementary primer (if used for PCR), primers for amplification (if probe), bibliographic references. At the moment MPDB is searchable through some SRS servers. MPDB can easily be retrieved from our FTP server, together with SRS syntax files. Typology * ca. 4300 oligonucleotides * 821 different genes, of which 691 human and 112 viral * ca. 3536 oligonucleotides are human gene specific * ca. 620 oligonucleotides are viral gene specific | molecular probe, synthetic oligonucleotide, molecule, probe, synthetic, oligonucleotide, nucleotide sequence, amino acid sequence, oligo probe, oligo dna, pcr primer, virus | has parent organization: IST National Institute for Cancer Research; Genoa; Italy | Genetic polymorphism, Inherited disease, Infectious disease, Neurologic disease, Autoimmune disease, Cancer | PMID:9399819 PMID:9016509 PMID:8594603 PMID:7937049 PMID:8332523 PMID:1598231 |
nif-0000-03165 | SCR_007808 | Molecular Probe Data Base (MPDB), Molecular Probe Data Base, Molecular Probe Database | 2026-07-25 12:11:51 | 0 | ||||||
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PolyA DB Resource Report Resource Website 100+ mentions |
PolyA DB (RRID:SCR_007867) | PolyA_DB | database, data or information resource | A database of mRNA polyadenylation sites. PolyA_DB version 1 contains human and mouse poly(A) sites that are mapped by cDNA/EST sequences. PolyA_DB version 2 contains poly(A) sites in human, mouse, rat, chicken and zebrafish that are mapped by cDNA/EST and Trace sequences. Sequence alignments between orthologous sites are available. PolyA_SVM predicts poly(A) sites using 15 cis elements identified for human poly(A) sites. | FASEB list | has parent organization: University of Medicine and Dentistry of New Jersey; New Jersey; USA | SCR_007867 | 2026-07-25 12:11:51 | 101 | ||||||||||
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Gemma Resource Report Resource Website 1000+ mentions |
Gemma (RRID:SCR_008007) | Gemma | database, data or information resource | Resource for reuse, sharing and meta-analysis of expression profiling data. Database and set of tools for meta analysis, reuse and sharing of genomics data. Targeted at analysis of gene expression profiles. Users can search, access and visualize coexpression and differential expression results. | chip, microarray, functional genomics, gene expression, coexpression, differential expression, FASEB list |
is used by: NIF Data Federation is used by: Integrated Data Annotation is listed by: Debian is listed by: SoftCite is related to: Gene Ontology is related to: Gene Expression Omnibus is related to: Phenocarta has parent organization: University of British Columbia; British Columbia; Canada is parent organization of: Neurocarta |
NIGMS GM076990; Canadian Foundation for Innovation ; Michael Smith Foundation for Health Research ; Canadian Institutes for Health Research |
PMID:22782548 | Free, Freely available | nif-0000-08127, r3d100012747 | https://sources.debian.org/src/gemma/, https://doi.org/10.17616/R36R54, https://doi.org/10.17616/R36R54 | SCR_008007 | 2026-07-25 12:11:53 | 1112 | |||||
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Medical Information Mart for Intensive Care-III Resource Report Resource Website 100+ mentions |
Medical Information Mart for Intensive Care-III (RRID:SCR_017384) | MIMIC-III, MIMIC 3 | database, data or information resource | Collection of comprising deidentified health related data associated with patients who stayed in critical care units of Beth Israel Deaconess Medical Center between 2001 and 2012. Database includes information such as demographics, vital sign measurements made at bedside (~1 data point per hour), laboratory test results, procedures, medications, caregiver notes, imaging reports, and mortality (both in and out of hospital). | deidentified, health-related data, Beth Israel Deaconess Medical Center, , FASEB list | NIBIB | Freely Available, Free, Available for Download | https://physionet.org/users/help/data-sharing/ | SCR_017384 | , MIMIC-III, MIMIC 3, 3, MIMIC, Medical Information Mart for Intensive Care, Medical Information Mart for Intensive Care-III | 2026-07-25 12:12:12 | 174 | |||||||
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Biospecimen Repository Access and Data Sharing Resource Report Resource Website |
Biospecimen Repository Access and Data Sharing (RRID:SCR_017383) | BRADS | database, data or information resource | Access to data from the Division of Intramural Population Health Research (DIPHR) of the Eunice Kennedy Shriver National Institute of Child Health and Human Development (NICHD) from completed studies, including biospecimens and ancillary data. | child, health, human, development, dataset | NICHD | Restricted | https://brads.nichd.nih.gov/AccessRequest/AccessRequest/ | SCR_017383 | , BRADS, Biospecimen Repository Access and Data Sharing | 2026-07-25 12:12:13 | 0 | |||||||
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tfcheckpoint Resource Report Resource Website 1+ mentions |
tfcheckpoint (RRID:SCR_023880) | database, data or information resource | Collection of transcription factors annotated according to experimental and other evidence on their function as true DbTFs. Provides reference for both small scale experiments and genome scale studies. Curated compendium of specific DNA-binding RNA polymerase II transcription factors. | transcription factor, DNA-binding RNA polymerase II transcription factors, DNA-binding, RNA polymerase II transcription factors, | Norwegian Cancer Society ; Liaison Committee between the Central Norway Regional Health Authority ; Norwegian University of Science and Technology |
PMID:23933972 | Free, Freely available | SCR_023880 | 2026-07-25 12:12:18 | 3 | |||||||||
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LifeLegacy Foundation Resource Report Resource Website 1+ mentions |
LifeLegacy Foundation (RRID:SCR_000518) | biomaterial supply resource, material resource | A non-profit tissue bank that facilitates the distribution of non-transplantable tissue to the medical and research community. It provides snap frozen low post mortem interval (PMI) tissue, normal and diseased tissue, plastinated specimens, anatomical specimens, and specialty specimens. The foundation also works to increase public awareness of research tissue donation for medical research. | tissue, bank, medicine, research, body, transplant, biomaterial | is listed by: One Mind Biospecimen Bank Listing | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_37185 | SCR_000518 | LifeLegacy | 2026-07-25 12:12:19 | 1 | ||||||||
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University of Michigan Human Breast Cancer Cell Lines Resource Report Resource Website 1+ mentions |
University of Michigan Human Breast Cancer Cell Lines (RRID:SCR_000542) | University of Michigan Human Breast Cancer Cell Lines | biomaterial supply resource, material resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 1, 2023. Asterand, Inc., the Detroit-based supplier of human tissue products and services, announces the distribution of eleven breast cancer cell lines, derived at the University of Michigan. The University has agreed to license the marketing of the breast cancer cell lines, known as the SUM lines, through Asterand in an effort to provide an exceptional tool to a broad base of researchers studying the disease. There are an estimated 1.2 million new diagnoses worldwide of breast cancer each year. The cell lines can be used to study all aspects of breast cancer biology, from new drug target identification to cell signaling to effects of novel drugs on cellular proliferation. | cell line, breast cancer |
is related to: Asterand has parent organization: University of Michigan Medical School; Michigan; USA |
Breast cancer | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_84393 | SCR_000542 | University of Michigan SUM-LINES, University of Michigan Human Breast Cancer Cell Lines (SUM-LINES) | 2026-07-25 12:12:18 | 3 | ||||||
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Mexican Health and Aging Study Resource Report Resource Website 1+ mentions |
Mexican Health and Aging Study (RRID:SCR_000818) | MHAS | biomaterial supply resource, material resource | A dataset of a prospective panel study of health and aging in Mexico. The study was designed to ensure comparability with the U.S. Health and Retirement Study in many domains, and the NHANES III. The baseline survey in 2001 is nationally representative of the 13 million Mexicans born prior to 1951. The six Mexican states which are home to 40% of all migrants to the U.S. were over-sampled at a rate of 1.7:1. Spouse/partners of eligible respondents were interviewed also, even if the spouse was born after 1950. Completed interviews were obtained in 9,862 households, for a total of 15,186 individual interviews. All interviews were face-to-face, with average duration of 82 minutes. A direct interview (on the Basic questionnaire) was sought, and Proxy interviews were obtained when poor health or temporary absence precluded a direct interview. Questionnaire topics included the following: * HEALTH MEASURES: self-reports of conditions, symptoms, functional status, hygienic behaviors (e.g., smoking & drinking history), use/source/costs of health care services, depression, pain, reading and cognitive performance; * BACKGROUND: Childhood health and living conditions, education, ability to read/write and count, migration history, marital history; * FAMILY: rosters of all children (including deceased children); for each, demographic attributes, summary indicators of childhood and current health, education, current work status, migration. Parent and sibling migration experiences; * TRANSFERS: financial and time help given to and received by respondent from children, indexed to specific child; time and financial help to parent; * ECONOMIC: sources and amounts of income, including wages, pensions, and government subsidies; type and value of assets. All amount variables are bracketed in case of non-response. * HOUSING ENVIRONMENT: type, location, building materials, other indicators of quality, and ownership of consumer durables; * ANTHROPOMETRIC: for a 20% sub-sample, measured weight, height; waist, hip, and calf circumference; knee height, and timed one-leg stands. Current plans are to conduct another two follow-up surveys in 2012 and 2014 and will field the 3rd and 4th waves of survey data collection in Mexico. For the 2012 wave, interviews will be sought for: every person who was part of the panel in 2003 and their new spouse / partner, if applicable, and a new sample of persons born between 1952 and 1962. For the 2014 wave, we will follow-up the whole sample from 2012. Interviews will be conducted person-to-person. Direct interviews will be sought with all informants, but proxy interviews are allowed for those unable to complete their own interview for health or cognitive reasons. A next-of-kin interview will be completed with a knowledgeable respondent for those who were part of the panel but have died since the last interview. A sub-sample will be selected to obtain objective markers such as blood sample and anthropometric measures. Data Availability: The 2001 baseline data, 2003 follow-up data, and documentation can be downloaded. * Dates of Study: 2001-2003 * Study Features: Longitudinal, International, Anthropometric Measures * Sample Size: 2001: 15,186 (Baseline) Link: * ICPSR: http://www.icpsr.umich.edu/icpsrweb/ICPSR/studies/00142 | health, mexican, adult human, mexico, longitudinal, international, anthropometric measure, middle adult human, late adult human, interview, survey, spouse, health behavior, health status, childhood, family background, migration, income, housing environment, family life, behavior, housing, living arrangement, mental health, quality of life, questionnaire, disease, disability, economic, family, urban, rural, blood, self-report, chronic condition, symptom report, functionality, cognition, socioeconomic, work history, health insurance, health expenditure, parent, child, household resident, asset, pension, smoking, alcohol use, depressive disorder, pain, reading, education, demographics, employment |
is listed by: One Mind Biospecimen Bank Listing is listed by: Inter-university Consortium for Political and Social Research (ICPSR) has parent organization: University of Texas Medical Branch at Galveston |
Aging | NIA R01AG018016 | Public, Registration is required, Acknowledgement requested | nlx_151859 | http://www.mhas.pop.upenn.edu/english/home.htm | SCR_000818 | Mexican Health & Aging Study, Mexican Health and Aging Study (MHAS) | 2026-07-25 12:12:19 | 3 | ||||
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Genetics of Kidneys in Diabetes Resource Report Resource Website |
Genetics of Kidneys in Diabetes (RRID:SCR_000133) | GoKinD, Go KinD | biomaterial supply resource, material resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 31,2025. Collect, store, and distribute genetic samples from cases and controls of type 1 diabetes and diabetic nephropathy for investigator-driven research into the genetic basis of diabetic nephropathy. As the risk of kidney complications in type 1 diabetes appears to have a considerable genetic component, this study assembled a large data resource for researchers attempting to identify causative genetic variants. The types of data collected allowed traditional case-control testing, a rapid and often powerful approach, and family-based analysis, a robust approach that is not influenced by population substructure. | clinical, genetics, genetic variant, gene, data set |
is listed by: One Mind Biospecimen Bank Listing is listed by: NIDDK Information Network (dkNET) has parent organization: George Washington University; Washington D.C.; USA |
Type 1 diabetes, Diabetes, Diabetic nephropathy, Kidney disease | JDRF ; NIH |
PMID:16775037 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_152764 | http://www.gokind.org/access | SCR_000133 | Genetics of Kidneys in Diabetes (GoKinD) Study, Genetics of Kidneys in Diabetes Study | 2026-07-25 12:12:18 | 0 | |||
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Symptom Score for Benign Prostatic Hyperplasia Resource Report Resource Website |
Symptom Score for Benign Prostatic Hyperplasia (RRID:SCR_000127) | AUA BPH, AUABPH | assessment test provider, material resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented August 22, 2016. Adapted from the American Urology Association Symptom Score for Benign Prostatic Hyperplasia, this chart will assist physicians, researchers, and patients in assessing the severity of the problem. | severity, symptom, prostate |
is listed by: NIDDK Information Network (dkNET) has parent organization: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases |
Benign Prostatic Hyperplasia | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_152737 | https://www.niddk.nih.gov/health-information/health-topics/urologic-disease/benign-prostatic-hyperplasia-bph/pages/facts.aspx | SCR_000127 | American Urological Association's Symptom Score for Benign Prostatic Hyperplasia, AUA Symptom Score for BPH | 2026-07-25 12:12:19 | 0 | |||||
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Taburit Umbilical Cord Blood Bank Resource Report Resource Website |
Taburit Umbilical Cord Blood Bank (RRID:SCR_000920) | biomaterial supply resource, material resource | A blood bank that operates as the marketing arm for the family cord blood banking operations of Sheba Medical Center. It is the largest medical center in the Middle East with a 24/7 call center to answer questions. The center provides collection kits, supervises the collection process, and transports the collected blood to the Sheba Cord Blood Bank. | blood, bank, middle east, collection, transport, family, sheba medical center | nlx_38777 | http://www.taburit.co.il/ | SCR_000920 | Tamburit | 2026-07-25 12:12:21 | 0 | |||||||||
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NIH Toolbox Picture Vocabulary Test Resource Report Resource Website 1+ mentions |
NIH Toolbox Picture Vocabulary Test (RRID:SCR_000166) | Picture Vocabulary Test | assessment test provider, material resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 31,2025. A measure of receptive vocabulary that is administered in a computerized adaptive format. The respondent is presented with an audio recording of a word and four photographic images on the computer screen and is asked to select the picture that most closely matches the meaning of the word. This test takes approximately 4 minutes to administer and is recommended for ages 3-85. | cognition, language, vocabulary | has parent organization: NIH Toolbox - Assessment of Neurological and Behavioral Function | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_157773 | SCR_000166 | 2026-07-25 12:12:17 | 1 | ||||||||
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American Tissue Services Foundation - ATSF Resource Report Resource Website |
American Tissue Services Foundation - ATSF (RRID:SCR_000549) | ATSF | biomaterial supply resource, material resource | A non-profit organization that facilitates the donation of tissues. It supports healthcare agencies, coroners, medical examiners and funeral professionals through donations and training, as well as partnering with organizations that utilize tissue in medical care and research. | tissue, donation, healthcare, medicine, research | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_97074 | SCR_000549 | American Tissue Services Foundation | 2026-07-25 12:12:18 | 0 | ||||||||
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PRACSIS - Prognosis and Risk in Acute Coronary Syndromes In Sweden Resource Report Resource Website |
PRACSIS - Prognosis and Risk in Acute Coronary Syndromes In Sweden (RRID:SCR_000615) | PRACSIS | biomaterial supply resource, material resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented August 23, 2016. PRACSIS (Prognosis and Risk in Acute Coronary Syndromes In Sweden) aims to study prognosis and its predictors in a consecutive series of patients with acute coronary syndrome (ACS). The study is comprised of patients between 18 and 80 years diagnosed at the coronary care unit at the Sahlgrenska University Hospital with unstable angina, non-ST-elevation MI or ST-elevation MI. Extensive information on medical history and blood samples for analyses of biochemical markers and genetic factors have been collected. | cardiac disease, predictor, prognosis, medical history, biochemical marker, genetic factor, biomarker, gene, genetics, adult |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Karolisnka Biobank |
Acute coronary syndrome | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_151442 | SCR_000615 | PRACSIS - Prognosis Risk in Acute Coronary Syndromes In Sweden, Prognosis and Risk in Acute Coronary Syndromes In Sweden, KI Biobank - PRACSIS | 2026-07-25 12:12:20 | 0 | ||||||
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NIH Toolbox Words-in Noise Test Resource Report Resource Website |
NIH Toolbox Words-in Noise Test (RRID:SCR_000174) | WIN Test | assessment test provider, material resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 31,2025. Assessment test that measures how much difficulty a person might have hearing in a noisy environment. A recorded voice instructs the participant to listen to and then repeat words. The task becomes increasingly difficult as the background noise gets louder. This test was developed to measure a person's ability to recognize single words presented amid varying levels of background noise. Recommended for participants ages 6-85 and takes approximately six minutes to administer. | sensation, audition, hearing, ear, noise | has parent organization: NIH Toolbox - Assessment of Neurological and Behavioral Function | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_157784 | SCR_000174 | NIH Toolbox Words-in Noise (WIN) Test | 2026-07-25 12:12:18 | 0 | |||||||
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Buss-Perry Aggression Questionnaire Resource Report Resource Website |
Buss-Perry Aggression Questionnaire (RRID:SCR_000177) | AGQ | assessment test provider, material resource | A 29 item aggression assessment where participants rank certain statements along a 5 point continuum from "extremely uncharacteristic of me"to "extremely characteristic of me". The scores are normalized on a scale of 0 to 1, with 1 being the highest level of aggression. The questionnaire returns scores for 4 dimensions of aggression: Physical Aggression, Verbal Aggression, Anger, Hostility. | psychology, scale, aggression, assessment, questionnaire, physical aggression, verbal aggression, anger, hostility | Physical Aggression, Verbal Aggression, Anger, Hostility | Public, Non-Commercial | nlx_157852 | SCR_000177 | Aggression Questionnaire, Buss Perry Aggression Questionnaire | 2026-07-25 12:12:19 | 0 | |||||||
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Living Biobank Resource Report Resource Website |
Living Biobank (RRID:SCR_001510) | Living Biobank | biomaterial supply resource, material resource | Provides investigators with the opportunity to obtain on-demand biological samples from selected individuals that TrialNet has developed through the longitudinal monitoring of individuals at risk for the development of type 1 diabetes within the Natural History study. Exploratory research is encouraged under this initiative. Studies must use TrialNet screened subjects, and cannot interfere with ongoing clinical trials or studies. Investigators can select the clinical characteristics needed for their study as well as the sample type and collection frequency. Although many Living Biobank studies may be implemented through cost-sharing with the TrialNet network, special sample collections and visits outside of the normal visit schedules will incur additional costs which should be covered by the approved applicant. In addition, some studies may require effort from the TrialNet coordinating center, with costs covered by the approved ancillary study. Living biobank studies will be evaluated with careful consideration for their potential impact on the objectives and performance of the TrialNet Natural History study. To protect the interests of TrialNet, each living biobank study must be reviewed and approved by the Ancillary Studies Committee before its initiation. All approved living biobank studies will be reviewed yearly to evaluate their progress, and impact on TrialNet as a whole. TrialNet welcomes the submission of living biobank studies as an adjunct to ongoing protocols. | whole blood, serum, plasma, dna, rna, peripheral blood mononuclear cell, blood |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Type 1 Diabetes TrialNet |
Type 1 diaberes, Diabetes | Free, Freely available | nlx_152813 | SCR_001510 | TrialNet Living Biobank | 2026-07-25 12:12:22 | 0 |
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Data set from Kravitz, Owen and Kretizer's 2012 paper "Optogenetic identification of striatal projection neuron subtypes during in vivo recordings."
