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https://code.google.com/p/highssr/

Software that predicts microsatellites with Tandem Repeats Finder (TRF).

Proper citation: HighSSR (RRID:SCR_007949) Copy   

•   Source: SciCrunch Registry

http://genotan.sourceforge.net/

A free software tool to identify length variation of microsatellites from short sequence reads.

Proper citation: GenoTan (RRID:SCR_007935) Copy   

•   Source: SciCrunch Registry

http://smithlab.usc.edu/histone/rseg/

Software package aimed to analyze ChIP-Seq data, especially for identifying genomic regions and their boundaries marked by diffusive histone modification markers, such as H3K36me3 and H3K27me3.

Proper citation: RSEG (RRID:SCR_007695) Copy   

•   Source: SciCrunch Registry

http://www.cns.org/

A professional organization focused on advancing neurosurgery by providing members with the educational and career development opportunities. They have an annual meeting and offer CME opportunities. The Congress of Neurological Surgeons seeks to improve the quality of healthcare through: * The development of educational programs that convey knowledge, enhance self-directed learning and improve patient outcomes. * Advancing the science of medical education. * Promoting original inquiry and the exchange of clinical and scientific evidence. * Public advocacy for the enhancement of quality, safety and access to neurosurgical care. The Congress of Neurological Surgeons seeks to advance the profession of neurosurgery through: * Refining neurosurgical practice based on evidence. * Promoting volunteerism and leadership development within our specialty. * Development of programs to promote safety, quality and efficiency in practice for domestic and international members.

Proper citation: Congress of Neurological Surgeons (RRID:SCR_007993) Copy   

•   Source: SciCrunch Registry

http://www.ebi.ac.uk/huber-srv/hilbert/

Software tool that allows to display very long data vectors in a space-efficient manner, allowing the user to visually judge the large scale structure and distribution of features simultaneously with the rough shape and intensity of individual features.

Proper citation: HilbertVis (RRID:SCR_007862) Copy   

•   Source: SciCrunch Registry

https://www.univ-rennes1.fr/

The University of Rennes 1 is one of the two main universities in the city of Rennes, France. It is under the Academy of Rennes. It specializes in science, technology, law, economy, management and philosophy.

Proper citation: University of Rennes 1; Rennes; France (RRID:SCR_007649) Copy   

•   Source: SciCrunch Registry

http://brig.sourceforge.net/

A cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a focus on handling genome assembly data.

Proper citation: BRIG (RRID:SCR_007802) Copy   

•   Source: SciCrunch Registry

http://medgene.med.harvard.edu/MEDGENE/

An algorithm that generates lists of genes associated with a gene or one or more disorders. The algorithm can be used in high-throughput screening experiments, can create disease-specific micro-arrays, and can sort the results of gene profiling data. Based on the co-citations of all Medline records, MedGene can retrieve the following relationships: 1. A list of human genes associated with a particular human disease in ranking order 2. A list of human genes associated with multiple human diseases in ranking order 3. A list of human diseases associated with a particular human gene in ranking order 4. A list of human genes associated with a particular human gene in ranking order 5. The sorted gene list from other disease related high-throughput experiments, such as micro-array 6. The sorted gene list from other gene related high-throughput experiments, such as micro-array

Proper citation: MedGene (RRID:SCR_008122) Copy   

•   Source: SciCrunch Registry

http://www.usc.edu/

American private research university in Los Angeles, California. Founded in 1880, it is the oldest private research university in California. USC has historically educated a large number of the nation's business leaders and professionals.

Proper citation: University of Southern California; Los Angeles; USA (RRID:SCR_008093) Copy   

•   Source: SciCrunch Registry

http://biq-analyzer-ht.bioinf.mpi-inf.mpg.de/

Software that currently allows to process an amount of bisulfite sequencing reads obtained in one or several bisulfite sequencing experiments.

Proper citation: BiQAnalyzer HT (RRID:SCR_008045) Copy   

•   Source: SciCrunch Registry

http://erlichlab.wi.mit.edu/lobSTR/

A software tool for profiling Short Tandem Repeats (STRs) from high throughput sequencing data., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

Proper citation: lobSTR (RRID:SCR_008030) Copy   

•   Source: SciCrunch Registry

http://www.sheffield.ac.uk/

Founded in 1905, the University of Sheffield is one of the UK''s leading Russell Group universities with an outstanding record in both teaching and research.

Proper citation: University of Sheffield; South Yorkshire; United Kingdom (RRID:SCR_008056) Copy   

•   Source: SciCrunch Registry

http://drive5.com/usearch/manual/uchime_algo.html

An algorithm for detecting chimeric sequences.

Proper citation: UCHIME (RRID:SCR_008057) Copy   

•   Source: SciCrunch Registry

http://www.bhf.org.uk/

British charity and fundraiser for cardiovascular research.

Proper citation: British Heart Foundation (RRID:SCR_002905) Copy   

•   Source: SciCrunch Registry

https://uni-koeln.de/

Public university in Germany that offers degrees in law, management and business, the arts and humanities, and human sciences.

Proper citation: University of Cologne; Cologne; Germany (RRID:SCR_002903) Copy   

•   Source: SciCrunch Registry

http://cran.r-project.org/web/packages/CNVassoc/

Software package that carries out association analysis of common copy number variants in population-based studies. It includes functions for analysing association under a series of study designs (case-control, cohort, etc), using several dependent variables (class status, censored data, counts) as response, adjusting for covariates and considering various inheritance models. It also includes functions for inferring copy number (CNV genotype calling). Various classes and methods for generic functions (print, summary, plot, anova, ... ) have been created to facilitate the analysis.

Proper citation: CNVassoc (RRID:SCR_002901) Copy   

•   Source: SciCrunch Registry

http://colorado.edu/

Public university that offers degrees in the sciences, humanities, and social sciences.

Proper citation: University of Colorado Boulder; Colorado; USA (RRID:SCR_003114) Copy   

•   Source: SciCrunch Registry

http://chiulab.ucsf.edu/surpi/

Software providing a computational pipeline for pathogen identification from complex metagenomic next-generation sequencing (NGS) data generated from clinical samples.

Proper citation: SURPI (RRID:SCR_003071) Copy   

•   Source: SciCrunch Registry

http://pfind.ict.ac.cn/software/pFind/index.html

A search engine system for automated peptide and protein identification from tandem mass spectra.

Proper citation: pFind (RRID:SCR_003011) Copy   

•   Source: SciCrunch Registry

http://cran.r-project.org/web/packages/gap/

GAP is designed as an integrated package for genetic data analysis of both population and family data. Currently, it contains functions for sample size calculations of both population-based and family-based designs, classic twin models, probability of familial disease aggregation, kinship calculation, some statistics in linkage analysis, and association analysis involving one or more genetic markers including haplotype analysis with or without environmental covariates.

Proper citation: Genetic Analysis Package (RRID:SCR_003006) Copy   

•   Source: SciCrunch Registry