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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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Apache Software Foundation Resource Report Resource Website 100+ mentions |
Apache Software Foundation (RRID:SCR_008588) | ASF | software resource | Provides support for the Apache community of open-source software projects. The Apache projects are characterized by a collaborative, consensus based development process, open and pragmatic software license, and a desire to create high quality software that leads the way in its field. | open-source software projects, open and pragmatic software license, |
is related to: Apache is parent organization of: Apache Hadoop |
nif-0000-31892 | SCR_008588 | ApacheCon, The Apache Software Foundation, The Apache Software Fundation | 2026-07-25 12:06:51 | 133 | ||||||||
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Nature Publishing Group Resource Report Resource Website 1+ mentions |
Nature Publishing Group (RRID:SCR_008741) | NPG | commercial organization | Nature Publishing Group (NPG) is a publisher of high impact scientific and medical information in print and online. NPG publishes journals, online databases and services across the life, physical, chemical and applied sciences and clinical medicine. Focusing on the needs of scientists, Nature (founded in 1869) is the leading weekly, international scientific journal. In addition, for this audience, NPG publishes the Nature research journals and Nature Reviews journals, plus a range of prestigious academic journals including society-owned publications. Online, nature.com provides over 6 million visitors per month with access to NPG publications and online databases and services, including news and comment from Nature, NatureJobs plus access to Nature Network and Nature Education''s Scitable.com. Scientific American is at the heart of NPG''s newly-formed consumer media division, meeting the needs of the general public. Founded in 1845, Scientific American is the oldest continuously published magazine in the US and the leading authoritative publication for science in the general media. Together with scientificamerican.com and 16 local language editions around the world it reaches over 3 million consumers and scientists. Other titles include Scientific American Mind and Spektrum der Wissenschaft in Germany. Scientific American is available for site license access on the nature.com platform. Throughout all its businesses NPG is dedicated to serving the scientific and medical communities and the wider scientifically interested general public. Part of Macmillan Publishers Limited, NPG is a global company with principal offices in London, New York and Tokyo, and offices in cities worldwide including Boston, Buenos Aires, Delhi, Hong Kong, Madrid, Barcelona, Munich, Heidelberg, Basingstoke, Melbourne, Paris, San Francisco, Seoul and Washington DC. Read our history for a timeline of NPG and the scientific events which have helped shape the direction of the business. | publishing, science, medicine, clinical medicine |
is affiliated with: SourceData is related to: Antibodypedia is parent organization of: NextGenSeq(at)nature.com is parent organization of: Journal of Cerebral Blood Flow and Metabolism is parent organization of: Nature Online Video Streaming Archive is parent organization of: Naturejobs is parent organization of: nature.com blogs is parent organization of: Nature Network is parent organization of: Protocol Exchange is parent organization of: Nature Precedings is parent organization of: Functional Glycomics Research |
nlx_143840 | SCR_008741 | npg: nature publishing group | 2026-07-25 12:06:54 | 1 | ||||||||
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Gnuplot Resource Report Resource Website 500+ mentions |
Gnuplot (RRID:SCR_008619) | software resource | Gnuplot is a portable command-line driven graphing utility for linux, OS/2, MS Windows, OSX, VMS, and many other platforms. The source code is copyrighted but freely distributed (i.e., you don''t have to pay for it). It was originally created to allow scientists and students to visualize mathematical functions and data interactively, but has grown to support many non-interactive uses such as web scripting. It is also used as a plotting engine by third-party applications like Octave. Gnuplot has been supported and under active development since 1986. Gnuplot supports many types of plots in either 2D and 3D. It can draw using lines, points, boxes, contours, vector fields, surfaces, and various associated text. It also supports various specialized plot types. Demos here. Gnuplot supports many different types of output: interactive screen terminals (with mouse and hotkey input), direct output to pen plotters or modern printers, and output to many file formats (eps, fig, jpeg, LaTeX, metafont, pbm, pdf, png, postscript, svg, ...). Gnuplot is easily extensible to include new output modes. Recent additions include an interactive terminal based on wxWidgets and the creation of mousable graphs for web display using the HTML5 canvas element. | nif-0000-31978 | SCR_008619 | Gnuplot | 2026-07-25 12:06:53 | 578 | |||||||||||
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InVEx Resource Report Resource Website 1+ mentions |
InVEx (RRID:SCR_008734) | InVEx | software resource | A permutation-based method (written in Python) for ascertaining genes with a somatic mutation distribution showing evidence of positive selection for non-silent mutations. |
is listed by: OMICtools has parent organization: Broad Institute |
OMICS_00151 | SCR_008734 | Introns Vs Exons | 2026-07-25 12:06:50 | 4 | |||||||||
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Moffitt Cancer Center Resource Report Resource Website 1+ mentions |
Moffitt Cancer Center (RRID:SCR_008730) | Moffitt | institutional portal | H. Lee Moffitt Cancer Center & Research Institute has made a lasting commitment to the prevention and cure of cancer, working tirelessly in the areas of patient care, research and education to advance one step further in fighting this disease. As part of an elite group of National Cancer Institute (NCI) Comprehensive Cancer Centers, Moffitt focuses on the development of early stage translational research aimed at the rapid translation of scientific discoveries to benefit patient care. Since the first patient admission in October 1986, Moffitt physicians, scientists and staff members have worked together to establish a tradition of excellence offered in an atmosphere characterized by kindness, caring and hope. The Cancer Center''s future growth in clinical care and research rests firmly on this tradition and makes possible the changes ahead. The mission of Moffitt Cancer Center is to contribute to the prevention and cure of cancer. Moffitt''s vision is to be the leader in scientific discovery and translation into compassionate care, cures, and prevention of cancer for our community and the world. As it grows to fulfill its mission, the Cancer Center will continue to be distinguished by its compassionate and effective patient care. Moffitt Cancer Center is a not-for-profit institution. It includes private patient rooms, the Southeast''s largest Blood and Marrow Transplant Program, outpatient treatment programs that record more than 320,500 visits a year, the Moffitt Research Center, Moffitt Cancer Center at International Plaza and the Lifetime Cancer Screening & Prevention Center. | cancer, human |
has parent organization: University of South Florida; Florida; USA is parent organization of: Moffitt Cancer Center Tissue Core is parent organization of: Moffitt Cancer Center Proteomics and Metabolomics Core Facility is parent organization of: Moffitt Cancer Center Tissue Core Facility is parent organization of: Moffitt Cancer Center Small Animal Imaging Laboratory Core Facility is parent organization of: Moffitt Cancer Center Molecular Genomics Core Facility is parent organization of: Moffitt Cancer Center Molecular Genomics Core Facility |
NCI | nlx_143722 | SCR_008730 | H. Lee Moffitt Cancer Center and Research Institute, H. Lee Moffitt Cancer Center & Research Institute | 2026-07-25 12:06:50 | 3 | |||||||
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dCAPS Finder Resource Report Resource Website 100+ mentions |
dCAPS Finder (RRID:SCR_008612) | software resource | A simple program for finding nearly matched primers Sponsor: This material is based upon work supported by the National Science Foundation under Grant No. 0114726. | has parent organization: National Science Foundation | PMID:12446140 | nif-0000-31957 | SCR_008612 | dCAPS | 2026-07-25 12:06:49 | 158 | |||||||||
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Braintelemetry Resource Report Resource Website 1+ mentions |
Braintelemetry (RRID:SCR_008607) | software resource | The LVC64 accepts 64 microvolt-level buffered input signals from headstage preamps and serves as a 24-bit recording device. It is connected to a PC with an USB2.0 cable and provides a complete digital system to record broadband bioelectric signals. It has two parts such as a 64-channel ADC unit and a digital interface & power supply unit. Between these units there is a slip ring commutator and a DC motor. The main features of the LVC system include: Up to 128 Analog inputs per system; Each Analog input is sampled with an individual 24 bit delta-sigma A/D converter Analog inputs are simultaneously sampled at 1750 to 32000 samples per second In addition to multiple unit activity - the EEG, field potentials and behavioral marker signals are recorded simultaneously in the same file Full scale analog input range is 5 millivolts RMS (14 mV peak-to-peak) Analog inputs are differential inputs Extremely low input referred noise levels of max. 8 uV peak-to-peak Direct headstage tether and tether extension cable inputs Slip ring commutator for un-twisting the twisted tether cable Headstage power supplies Up to 24 bit TTL compatible Parallel Input Port for monitoring external signals and external Timestamp Clock input and output for multiple system synchronization Totally electrically isolated system from AC Power and Ground ''Microvolts-to-harddisk dumper'' data acquisition program running in host PC (32-bit MS Window XP) Online display of records during data acquisition in Host PC''s monitor Offline spike sorting by Cooperative Linux software of the Host PC | nif-0000-31947 | SCR_008607 | Braintelemetry | 2026-07-25 12:06:51 | 2 | |||||||||||
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Aniara Resource Report Resource Website 1+ mentions |
Aniara (RRID:SCR_008885) | commercial organization | An Antibody supplier | nlx_152272 | SCR_008885 | Aniara Co | 2026-07-25 12:06:52 | 1 | |||||||||||
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McMillen Foundation Resource Report Resource Website 1+ mentions |
McMillen Foundation (RRID:SCR_008908) | McMillen Foundation | funding resource | A foundation that offers grants for researchers in cardiology, lipid and organ transplant in Washington and Alaska. The Robert B McMillen Foundation is a non-profit charitable foundation established to; promote research in the areas of cardiology, lipid and organ transplant, support education at the university and college level in the states of Washington and Alaska and provide funding for social service organizations. What we fund: * MEDICAL: 50% of our annual giving is earmarked for medical research. We will consider making grants to non-profit organizations involved in researching cardiology, lipid and organ transplants. * EDUCATION: 25% of our annual giving is earmarked for Education at the University level in the states of Washington and Alaska. Funding will be provided to support the art departments of post secondary schools who offer a degree in the visual arts. * SOCIAL: 25% of our annual giving is earmarked for social areas including, but not limited to, Goodwill, Salvation Army & United Way. Preference is given to organizations and/or programs that use art as the vehicle to impact communities and change individual lives. | visual arts, art, medical research, medicine, research, cardiology, lipid, organ transplant, social service, grant, social enhancement, higher education, washington, alaska, scholarship | nlx_151472 | SCR_008908 | Robert B McMillen Foundation | 2026-07-25 12:06:52 | 1 | |||||||||
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EyeWire Resource Report Resource Website 10+ mentions |
EyeWire (RRID:SCR_008816) | Eyewire | software resource | An online game for mapping neuronal connections in the retina. The site provides microscopic retinal images and uses crowdsourcing to make sense of the images. EyeWire is where the general public can help make discoveries about the neural structure of the retina. The challenge is to map the neural connections of the retina by analyzing images that were acquired using serial electron microscopy at the Max Planck Institute for Medical Research in Heidelberg, Germany. A retinal volume of size 350��300��60 micrometer cubed was imaged, amounting to about one terabyte of data. Retinal Connectome * Game 1: Reconstructing Neurons * Game 2: Identifying Synapses Eyewire incorporates computational technologies developed by the laboratory of Prof. Sebastian Seung at MIT. | neuron, retina, neuronal connection, crowdsourcing, image, game, connectome, connectomics, challenge, eye, synapse, segmentation, BRAIN Initiative |
is recommended by: BRAIN Initiative has parent organization: Massachusetts Institute of Technology; Massachusetts; USA; |
BRAIN Project D16PC0005 | nlx_144421 | SCR_008816 | 2026-07-25 12:06:51 | 23 | ||||||||
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Life Technologies Resource Report Resource Website 100+ mentions |
Life Technologies (RRID:SCR_008817) | Life Technologies | commercial organization | Vendor for life sciences products and services ranging from instruments to antibodies. |
is related to: READNA is parent organization of: Variant Reporter Software is parent organization of: BLOCK-iT RNAi Designer is parent organization of: Invitrogen Clones is parent organization of: Invitrogen Antibodies is parent organization of: LifeScope is parent organization of: Nephromine |
SciRes_000120, nlx_144442 | SCR_008817 | Ambion | 2026-07-25 12:06:53 | 319 | |||||||||
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ABFrontier Resource Report Resource Website 500+ mentions |
ABFrontier (RRID:SCR_008899) | commercial organization | An Antibody supplier | nlx_152246 | SCR_008899 | AbFrontier Co. Ltd., AB Frontier | 2026-07-25 12:06:52 | 535 | |||||||||||
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Alzheimer's Association International Research Grant Program Resource Report Resource Website 1+ mentions |
Alzheimer's Association International Research Grant Program (RRID:SCR_008775) | funding resource | An organization that funds research for Alzheimer's disease, provides information on new treatment strategies, provides information on caring for afflicted people, and generally increases public knowledge of disease prevention. This program financially supports new Alzheimer's studies. These research projects are selected by the Medical and Scientific Advisory Council. The council chooses which studies to address based on their potential uses in diagnostics, genetics, treatments, prevention, early detection and general enhancement of lifestyle. | alzheimer's disease, grant, research funding, alzheimer's prevention, funding resource | has parent organization: Alzheimers Association | Available to researchers | nlx_144113 | SCR_008775 | Alzheimer's Association Grants, Alzheimer's Association International Research Grant Program | 2026-07-25 12:06:51 | 1 | ||||||||
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McKnight Foundation Resource Report Resource Website 10+ mentions |
McKnight Foundation (RRID:SCR_008776) | McKnightFdn | institution | An endowment that offers funding for neuroscience research, especially as it may apply to Minnesota, agriculture, or if the researchers are based in Minnesota. The McKnight Foundation, a Minnesota-based family foundation, seeks to improve the quality of life for present and future generations through grantmaking, collaboration, and strategic policy reform in the following areas: arts, education and learning, environment, the region and communities, agricultural research, and neuroscience research. The McKnight Foundation assists nonprofit organizations and public agencies to improve the quality of life for all people, particularly those in need. Through grantmaking, coalition-building, and encouragement of strategic policy reform, we aim to build and maintain vibrant communities; enrich people''s lives through the arts; encourage protection of the natural environment; and promote research in selected fields. The Foundation had assets of approximately $1.8 billion and gave about $98 million in grants in 2009. Generally speaking, McKnight supports nonprofit organizations in Minnesota, U.S., only. McKnight''s primary geographic focus in grantmaking is to nonprofit organizations located within the state of Minnesota. We do not provide funding outside Minnesota, with five important programmatic exceptions: * Collaborative Crop research: International. * East Africa: Tanzania and Uganda only. * Mississippi River: 10 states bordering or encompassing the Mississippi River. * Neuroscience research: National. * Southeast Asia: Cambodia, Laos, and Vietnam only. Each program is different. Please consult the specific guidelines appropriate to your project or organization for funding details. With very few exceptions, McKnight funds nonprofit organizations only. To be eligible for a grant, applicants must be classified by the Internal Revenue Service as tax-exempt, nonprofit organizations. We discourage the use of fiscal agents. | grant, art, education, learning, environment, region, community, agricultural, research, neuroscience, international, minnesota | is parent organization of: McKnight Endowment Fund for Neuroscience | grid.453258.d, Crossref funder ID: 100005270, nlx_144128 | https://ror.org/003ghvj67 | http://www.mcknight.org/index.aspx | SCR_008776 | The McKnight Foundation | 2026-07-25 12:06:53 | 11 | ||||||
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McKnight Endowment Fund for Neuroscience Resource Report Resource Website 1+ mentions |
McKnight Endowment Fund for Neuroscience (RRID:SCR_008771) | McKnight Endowment Fund for Neuroscience | funding resource | An endowment that offers funding for memory research. The McKnight Endowment Fund for Neuroscience is an independent charitable organization established by The McKnight Foundation to carry out the wishes of its founder, William L. McKnight (1887-1979). Currently, the Endowment Fund for Neuroscience administers four awards which support young and established neuroscientists and encourage interdisciplinary collaboration: * Memory and Cognitive Disorders Awards * Neuroscience of Brain Disorders Awards * Scholar Awards * Technological Innovations in Neuroscience Awards Mr. McKnight, who led the 3M company for three decades, had a personal interest in memory and its diseases. He chose to set aside part of his legacy to bring hope to those suffering from brain injury or disease and cognitive impairment. | award, neuroscience, brain injury, brain, memory, cognitive impairment | has parent organization: McKnight Foundation | nlx_144129 | SCR_008771 | 2026-07-25 12:06:51 | 1 | |||||||||
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PASTA Resource Report Resource Website 10+ mentions |
PASTA (RRID:SCR_008770) | PASTA | software resource | A complete pipeline for the analysis of alternative splicing using RNA-Sequencing data. |
is listed by: OMICtools has parent organization: University of Florida; Florida; USA |
OMICS_01247 | SCR_008770 | Patterned Alignments for Splicing and Transcriptome Analysis | 2026-07-25 12:06:55 | 14 | |||||||||
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QPALMA Resource Report Resource Website 1+ mentions |
QPALMA (RRID:SCR_008791) | QPALMA | software resource | An alignment tool targeted to align spliced reads produced by Next Generation sequencing platforms such as Illumina Solexa or 454. | is listed by: OMICtools | OMICS_01248 | SCR_008791 | QPALMA: Optimal Spliced Alignments of Short Sequence Reads | 2026-07-25 12:06:51 | 1 | |||||||||
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Central Brain Tumor Registry of the United States Resource Report Resource Website 10+ mentions |
Central Brain Tumor Registry of the United States (RRID:SCR_008748) | CBTRUS | nonprofit organization | Voluntary, non-profit organization dedicated to collecting and disseminating statistical data. Resource for gathering and disseminating epidemiologic data on all primary benign and malignant brain and other CNS tumors. | human, brain, tumor, cancer, central nervous system, epidemiology, incidence, survival, diagnosis, treatment, benign, malignant, registry, epidemiological data, aggregator, clinical, statistics, population, histology, age, gender, race, hispanic, mortality | Brain tumor, Aging | American Brain Tumor Association ; National Brain Tumor Society ; Pediatric Brain Tumor Foundation ; NCI contract HHSN261201000576P |
PMID:23095881 | Application required., The community can contribute to this resource | grid.492337.8, ISNI: 0000 0004 0484 2205, nlx_143889 | https://ror.org/03849s113 | SCR_008748 | 2026-07-25 12:06:50 | 26 | |||||
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CBioC Resource Report Resource Website 1+ mentions |
CBioC (RRID:SCR_008863) | CBioC | software resource | A tool for extraction and collaboration for data curation related to biology. CBioC runs as a web browser extension and allows unobtrusive use of the system during the regular course of research in PubMed. It can also be accessed directly (without having to install a plug-in). Automated text extraction is used as a starting point to bootstrap the database, but then it is up to biologists improve upon the extracted data, ironing out inconsistencies by subsequent edits on a massive scale. * After install, it loads when you visit PubMed. * Gets interactions from PubMed abstracts. * Allows you to vote and modify extracted data. * Also shows data from BIND, DIP, MINT, GRID, IntAct. | text extraction, curation, crowd sourcing |
is listed by: 3DVC is related to: PubMed has parent organization: Arizona State University; Arizona; USA |
Arizona State University 0412000 | PMID:17951840 | nlx_149235 | SCR_008863 | CBioC - Collaboratively uncovering the nuggets of knowledge buried in millions of biomedical texts, Collaborative Bio Curation | 2026-07-25 12:06:54 | 1 | ||||||
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DIAMOND Resource Report Resource Website 1000+ mentions |
DIAMOND (RRID:SCR_009457) | DIAMOND | software resource | Software to: view dicom files and assemble them into 3D volumes. View and convert between Analyze, Nifti, and Interfile. Classify and organize dicoms and 3D volumes using metadata. Search and report on a collection of scans. | reusable library, analyze, database application, dicom, format conversion, image display, image reconstruction, magnetic resonance, nifti, python, software, visualization, workflow, FASEB list |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: University of California at Davis; California; USA |
nlx_155603 | SCR_009457 | UC Davis IDeA Lab Applications for Management Of Neuroimaging Data | 2026-07-25 12:06:55 | 4152 |
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Data set from Kravitz, Owen and Kretizer's 2012 paper "Optogenetic identification of striatal projection neuron subtypes during in vivo recordings."
