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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Creative Biolabs Resource Report Resource Website 10+ mentions |
Creative Biolabs (RRID:SCR_012557) | commercial organization | Biotechnology company specializing in developing and production of antibodies and service provider for customized products and relevant services. Committed to changing traditional antibody model and establishing new service platform. Specialized in providing custom biotechnology and pharmaceutical services that cover full scope of biotechnology needs of early drug discovery and drug development. |
is listed by: ScienceExchange is parent organization of: Creative Biolabs Model Organism Antibodies Service Resource is parent organization of: Creative Biolabs Non-IgG Antibody Isotypes Services |
SciEx_4666 | http://www.scienceexchange.com/facilities/creative-biolabs | SCR_012557 | 2026-07-25 12:07:33 | 36 | ||||||||||
|
DNAcopy Resource Report Resource Website 100+ mentions |
DNAcopy (RRID:SCR_012560) | DNAcopy | software resource | Software that segments DNA copy number data using circular binary segmentation to detect regions with abnormal copy number. | bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools has parent organization: Bioconductor |
OMICS_00720, biotools:dnacopy | https://bio.tools/dnacopy, https://sources.debian.org/src/r-bioc-dnacopy/ | SCR_012560 | 2026-07-25 12:07:33 | 334 | ||||||||
|
AutoDock Resource Report Resource Website 10000+ mentions |
AutoDock (RRID:SCR_012746) | autodock | software resource | Software suite of automated docking tools. Designed to predict how small molecules, such as substrates or drug candidates, bind to receptor of known 3D structure. AutoDock consist of AutoDock 4 and AutoDock Vina. AutoDock 4 consists of autodock to perform docking of ligand to set of grids describing target protein, and autogrid to pre calculate these grids. | Small molecules receptor binding, automated docking tools, 3D structure, AutoDock 4, AutoDock Vina, ligand, docking |
is listed by: bio.tools is listed by: Debian is listed by: SoftCite is related to: Autogrid |
PMID:19399780 | Free, Available for download, Freely available | OMICS_01594, biotools:autodock | https://bio.tools/autodock, https://sources.debian.org/src/autodock/ | SCR_012746 | 2026-07-25 12:07:39 | 11935 | ||||||
|
ExiMiR Resource Report Resource Website 1+ mentions |
ExiMiR (RRID:SCR_012753) | ExiMiR | software resource | R functions for the normalization of Exiqon miRNA array data. |
is listed by: OMICtools has parent organization: Bioconductor |
OMICS_00783 | SCR_012753 | 2026-07-25 12:07:35 | 1 | ||||||||||
|
CNV Workshop Resource Report Resource Website 1+ mentions |
CNV Workshop (RRID:SCR_012635) | CNV Workshop | software resource | Software for a web-enabled platform for analyzing genome variation such as copy number variation (CNV). |
is listed by: OMICtools has parent organization: SourceForge |
GNU Affero General Public License | OMICS_00715 | SCR_012635 | 2026-07-25 12:07:36 | 1 | |||||||||
|
motifRG Resource Report Resource Website 1+ mentions |
motifRG (RRID:SCR_012602) | motifRG | software resource | Software tools for discriminative motif discovery using regression methods. |
is listed by: OMICtools has parent organization: Bioconductor |
PMID:24162561 | Free | OMICS_00487 | SCR_012602 | motifRG - A package for discriminative motif discovery designed for high throughput sequencing dataset | 2026-07-25 12:07:34 | 5 | |||||||
|
American Academy of Neurology Resource Report Resource Website 10+ mentions |
American Academy of Neurology (RRID:SCR_012739) | AAN | institution | An international professional association of 24,000 neurologists and neuroscience professionals dedicated to promoting the highest quality patient-centered neurologic care. They provide guidance and inspiration through education, information, policy development and advocacy for our members and their patients. The Academy''s professional website is only one of the domains associated with the AAN: * TheBrainMatters.org, public & patient education website * m.AAN.com, mobile AAN.com for members * Neurology journal * Neurology Now, patient magazine * Neurology Today, magazine for neurology professionals The AAN is committed to bringing its members the highest quality continuing medical education and professional education opportunities. The Academy''s Education programs cover the spectrum of neurological disorders, from the most prevalent to newly emerging issues. The AAN also provides a wide range of program formats, including in-depth print, convenient online, and hands-on workshop options. The AAN Annual Meeting brings together more than 10,000 neuroscience professionals for one of the world''s largest neurology gatherings. It has long been a leading showcase for the latest developments in scientific research, and the place to honor peers at the forefront of the work. The AAN offers a variety of publications, news, blogs, jobs, and practice guidelines. | clinical neurology, grant, human, neurological disorder, neurologist, neurology, neuroscience professional, patient, professional association, self-assessment examination, continuing medical education, journal |
is parent organization of: Neurology Podcast is parent organization of: American Academy of Neurology Research Fellowship Program |
Wikidata: Q4742898, nif-0000-00453, ISNI: 0000 0001 0280 2179, grid.417923.a, Crossref funder ID: 100005339 | https://ror.org/00mv9dj85 | SCR_012739 | 2026-07-25 12:07:37 | 13 | ||||||||
|
MiRaGE Resource Report Resource Website 10+ mentions |
MiRaGE (RRID:SCR_012738) | MiRaGE | software resource | Software package that contains functions for inference of target gene regulation by miRNA, based on only target gene expression profile. |
is listed by: OMICtools has parent organization: Bioconductor |
OMICS_00785 | SCR_012738 | 2026-07-25 12:07:35 | 29 | ||||||||||
|
Samuel Roberts Noble Foundation Resource Report Resource Website 1+ mentions |
Samuel Roberts Noble Foundation (RRID:SCR_012794) | Noble Foundation | institution | The Samuel Roberts Noble Foundation is an independent, nonprofit institute headquartered in Ardmore, Okla. Founded in 1945, the Noble Foundation conducts direct operations, including assisting farmers and ranchers, and conducting plant science research and agricultural programs, to enhance agricultural productivity regionally, nationally and internationally. Employing more than 360 persons, the Noble Foundation conducts its operations through the activities of three operating divisions: * Agricultural Division: Serving a 47-county area within a 100-mile radius of the Noble Foundation''s headquarters in Ardmore, Okla., the Agricultural Division assists more than 1,700 regional farmers and ranchers in achieving their individual financial, production, stewardship and quality-of life goals. * Plant Biology Division: The Plant Biology Division conducts basic biochemical, genetic and genomic plant research for the purpose of improving crop productivity and value, and enhancing animal and human health. * Forage Improvement Division: The Forage Improvement Division translates basic plant science research into tangible plant varieties. Within the institution, the Forage Improvement Division serves as a link between the discoveries in the laboratory and the field, where such discoveries are intended to enhance agricultural outcomes in Oklahoma and around the world. The coordinated efforts of these operating divisions enable the Noble Foundation agricultural specialists and scientists to move science and innovation from the laboratory to the field, giving life to discovery and improving agriculture in Oklahoma, in the United States and around the world. |
is parent organization of: MedicCyc is parent organization of: LegumeIP is parent organization of: PlantTFcat is parent organization of: psRNATarget |
ISNI: 0000 0004 0370 5663, nlx_151456, grid.419447.b, Crossref funder ID: 100000944 | https://ror.org/02zta5505 | SCR_012794 | Noble Foundation | 2026-07-25 12:07:36 | 5 | ||||||||
|
Chinese Academy of Sciences; Beijing; China Resource Report Resource Website 10+ mentions |
Chinese Academy of Sciences; Beijing; China (RRID:SCR_012797) | CAS | university | Public university for graduate education, under the direct leadership of the Chinese Academy of Sciences. |
is parent organization of: pFind Studio: pLink is parent organization of: Cascleave is parent organization of: rSNPBase is parent organization of: pNovo+ is parent organization of: pLabel is parent organization of: pBuild is parent organization of: Human Potential Tumor Associated Antigen database is parent organization of: pFind is parent organization of: Linked Neuron Data is parent organization of: QC-Chain is parent organization of: Network Ontology Analysis is parent organization of: GOEAST - Gene Ontology Enrichment Analysis Software Toolkit is parent organization of: Human Protein-Protein Interaction Mining Tool is parent organization of: Database of Domain Interactions and Bindings is parent organization of: Group Information Guided ICA is parent organization of: Groupwise Image Registration Toolbox is parent organization of: Local Label Learning Segmentation is parent organization of: Shanghai Institutes for Biological Sciences; Shanghai; China is parent organization of: GPU-Meta-Storms is parent organization of: EPGD is parent organization of: MethyCancer is parent organization of: inGAP is parent organization of: SysZNF - C2H2 Zinc Finger genes is parent organization of: NONCODE is parent organization of: Systematic Platform for Identifying Mutated Proteins (SysPIMP) is parent organization of: IVDB - Influenza Virus Database is parent organization of: Brainnetome fMRI toolkit is parent organization of: Brainnetome Atlas Viewer is parent organization of: Automatic Tractography-based Parcellation Pipeline |
grid.9227.e, Wikidata: Q530471, ISNI: 119573309, Crossref funder ID: 501100002367, nlx_47801 | https://ror.org/034t30j35 | SCR_012797 | Chinese Academy of Sciences | 2026-07-25 12:07:40 | 30 | ||||||||
|
U.S. Department of Defense Resource Report Resource Website 10+ mentions |
U.S. Department of Defense (RRID:SCR_012712) | DOD | institution | Executive branch department of the federal government charged with coordinating and supervising all agencies and functions of the government directly related to national security and the United States Armed Forces. | Government granting agency |
is parent organization of: Defense Advanced Research Projects Agency is parent organization of: Office of Naval Research is parent organization of: Defense and Veterans Brain Injury Center is parent organization of: Defense Centers of Excellence for Psychological Health and Traumatic Brain Injury is parent organization of: Congressionally Directed Medical Research Program is parent organization of: BHSAI; Maryland; USA |
ISNI: 0000 0004 0478 6223, grid.420391.d, nlx_143670, Crossref funder ID: 100000005, Wikidata: Q11209 | https://ror.org/0447fe631 | SCR_012712 | Department of Defense, United States Department of Defense, US Department of Defense | 2026-07-25 12:07:35 | 41 | |||||||
|
GNU.org Resource Report Resource Website 100+ mentions |
GNU.org (RRID:SCR_012764) | software resource | Unix-like operating system that is free software. GNU (more precisely, GNU/Linux systems) are entirely free software. The GNU Project was launched in 1984 to develop the GNU system. A Unix-like operating system is a software collection of applications, libraries, and developer tools, plus a program to allocate resources and talk to the hardware, known as a kernel. The Hurd, GNU''s own kernel, is some way from being ready for daily use. Thus, GNU is typically used today with a kernel called Linux. This combination is the GNU/Linux operating system. GNU/Linux is used by millions, though many call it Linux by mistake. | nlx_156924 | SCR_012764 | 2026-07-25 12:07:40 | 173 | ||||||||||||
|
MotifLab Resource Report Resource Website 1+ mentions |
MotifLab (RRID:SCR_012649) | MotifLab | software resource | Software for a general workbench for analyzing regulatory sequence regions and discovering transcription factor binding sites and cis-regulatory modules. |
is listed by: OMICtools has parent organization: Norwegian University of Science and Technology; Trondheim; Norway |
Research Council of Norway | PMID:23323883 | Acknowledgement requested, Free, Public | OMICS_00486 | SCR_012649 | 2026-07-25 12:07:38 | 2 | |||||||
|
tRanslatome Resource Report Resource Website 1+ mentions |
tRanslatome (RRID:SCR_012810) | tRanslatome | software resource | Detection of differentially expressed genes (DEGs) from the comparison of two biological conditions among different levels of gene expression, using several statistical methods: Rank Product, t-test, SAM, Limma, ANOTA, DESeq, edgeR. |
is listed by: OMICtools has parent organization: Bioconductor |
PMID:24222209 | Free | OMICS_01316 | SCR_012810 | tRanslatome - Comparison between multiple levels of gene expression | 2026-07-25 12:07:41 | 2 | |||||||
|
Krona Resource Report Resource Website 50+ mentions |
Krona (RRID:SCR_012785) | Krona | software resource | Software that allows hierarchical data to be explored with zoomable pie charts. | bio.tools |
is listed by: bio.tools has parent organization: SourceForge |
PMID:21961884 | OMICS_01498, biotools:krona | https://bio.tools/krona | SCR_012785 | Krona - Hierarchical data browser | 2026-07-25 12:07:36 | 89 | ||||||
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U.S. Social Security Administration Resource Report Resource Website 1+ mentions |
U.S. Social Security Administration (RRID:SCR_012905) | SSA | institution | Independent agency of the U.S. federal government that administers Social Security, a social insurance program consisting of retirement, disability, and survivor benefits. | Government granting agency | is parent organization of: New Beneficiary Data System | Crossref funder ID: 100005225, ISNI: 0000 0001 0726 0196, nlx_151831, grid.453277.0, Wikidata: Q2824618 | https://ror.org/04b7xxn32 | SCR_012905 | Social Security Administration, Social Security Administration (SSA) | 2026-07-25 12:07:39 | 6 | |||||||
|
BEDOPS Resource Report Resource Website 100+ mentions |
BEDOPS (RRID:SCR_012865) | BEDOPS | software resource | A suite of tools to address common questions raised in genomic studies - mostly with regard to overlap and proximity relationships between data sets. |
is listed by: OMICtools is listed by: Debian |
PMID:22576172 DOI:10.1093/bioinformatics/bts277 |
GNU General Public License, v3 | OMICS_00949 | https://sources.debian.org/src/bedops/ | SCR_012865 | BEDOPS: high-performance genomic feature operations | 2026-07-25 12:07:42 | 220 | ||||||
|
EYE-EEG (combined eye-tracking & EEG) Resource Report Resource Website 10+ mentions |
EYE-EEG (combined eye-tracking & EEG) (RRID:SCR_012903) | EYE-EEG | software resource | A plugin for the open-source MATLAB toolbox EEGLAB developed with the goal to facilitate integrated analyses of electrophysiological and oculomotor data. The plugin parses, imports, and synchronizes simultaneously recorded eye tracking data and adds it as extra channels to the EEG. Saccades and fixations can be imported from the eye tracking raw data or detected with an adaptive velocity-based algorithm. Eye movements are then added as new time-locking events to EEGLAB's event structure, allowing easy saccade- and fixation-related EEG analysis (e.g., fixation-related potentials, FRPs). Alternatively, EEG data can be aligned to stimulus onsets and analyzed according to oculomotor behavior (e.g. pupil size, microsaccades) in a given trial. Saccade-related ICA components can be objectively identified based on their covariance with the electrically independent eye tracker. All functions can be accessed via EEGLAB's GUI or called from the command line. | eeg, meg, electrocorticography, matlab, os independent, eye, electrophysiology, oculomotor, eye tracking device |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: EEGLAB has parent organization: Humboldt University of Berlin; Berlin; Germany |
DFG | PMID:21744985 | GNU General Public License | nlx_155755 | http://www.nitrc.org/projects/eye-eeg | SCR_012903 | EYE-EEG: Eye tracking & EEG | 2026-07-25 12:07:41 | 13 | ||||
|
GENSCAN Resource Report Resource Website 100+ mentions |
GENSCAN (RRID:SCR_012902) | service resource | Resource out of service. Documented on February 24,2021. | has parent organization: German Cancer Research Center | Resource out of service. Documented on February 24,2021. | nif-0000-30609 | SCR_012902 | GENSCAN | 2026-07-25 12:07:39 | 192 | |||||||||
|
Flash Gviewer Resource Report Resource Website 1+ mentions |
Flash Gviewer (RRID:SCR_012870) | Flash GViewer | software resource | Flash GViewer is a customizable Flash movie that can be easily inserted into a web page to display each chromosome in a genome along with the locations of individual features on the chromosomes. It is intended to provide an overview of the genomic locations of a specific set of features - eg. genes and QTLs associated with a specific phenotype, etc. rather than as a way to view all features on the genome. The features can hyperlink out to a detail page to enable to GViewer to be used as a navigation tool. In addition the bands on the chromosomes can link to defineable URL and new region selection sliders can be used to select a specific chromosome region and then link out to a genome browser for higher resolution information. Genome maps for Rat, Mouse, Human and C. elegans are provided but other genome maps can be easily created. Annotation data can be provided as static text files or produced as XML via server scripts. This tool is not GO-specific, but was built for the purpose of viewing GO annotation data. Platform: Online tool | visualization, chromosome, video, gene, qtl, genome, navitgation, phenotype, ontology or annotation visualization |
is listed by: Gene Ontology Tools is related to: Gene Ontology has parent organization: Medical College of Wisconsin; Wisconsin; USA |
Free for academic use | nlx_149333 | http://gmod.org/flashgviewer | SCR_012870 | 2026-07-25 12:07:38 | 2 |
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Data set from Kravitz, Owen and Kretizer's 2012 paper "Optogenetic identification of striatal projection neuron subtypes during in vivo recordings."
