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http://www.eyesopen.com/oedocking

Complementary OEDocking tool for virtual screening, it performs a systematic and non-stochastic examination of all possible protein-ligand poses. The software also filters for shape complementarity and chemical feature alignment before selecting and optimizing protein-ligand poses.

Proper citation: FRED - Fast exhaustive docking (RRID:SCR_014885) Copy   

•   Source: SciCrunch Registry

http://www.lji.org

Institute dedicated to research in immunology by utilizing the academic and research communities in the La Jolla area as well as technological advances in biomedical research, imaging and analysis. Specific topics include autoimmune disease, cancer, allergies, infectious diseases and inflammation.

Proper citation: La Jolla Institute for Immunology (RRID:SCR_014845) Copy   

•   Source: SciCrunch Registry

http://www.essex.ac.uk/

A public research university in Colchester, Essex, England. The institution has degree programs that span the humanities, social sciences, and health.

Proper citation: University of Essex; England; United Kingdom (RRID:SCR_014725) Copy   

•   Source: SciCrunch Registry

http://ibrain.nuaa.edu.cn/

Brain research group affiliated with the Nanjing University of Aeronautics and Astronautics (NUAA) in China. The main research interests of iBRAIN include developing methods in machine learning, data mining, neural computation, and related areas for decoding brain functions or recognizing brain disease. Research related code and datasets can be found on the main site.

Proper citation: iBRAIN (RRID:SCR_014691) Copy   

•   Source: SciCrunch Registry

http://www.adaptivebiotech.com

Commercial organization which combines high-throughput sequencing and bioinformatics to profile T-cell and B-cell receptors.

Proper citation: Adaptive Biotechnologies (RRID:SCR_014709) Copy   

•   Source: SciCrunch Registry

https://www.ebi.ac.uk/efo/webulous/

Server used to create spreadsheets with ontology based data validations. Webulous can process populated templates and transform them into OWL/RDF using design patterns expressed in OPPL. It also has an add-on with Google spreadsheets which supports loading templates from a Webulous server and allows users to submit populated spreadsheets back to the Webulous server for transformation into OWL.

Proper citation: Webulous (RRID:SCR_014825) Copy   

•   Source: SciCrunch Registry

https://dogma.ccbb.utexas.edu/

Web-based annotation tool for plant chloroplasts and animal mitochondrial genomes. DOGMA allows the use of BLAST searches against a custom database, and conservation of basepairing in the secondary structure of animal mitochondrial tRNAs to identify and annotate genes.

Proper citation: DOGMA (RRID:SCR_015060) Copy   

•   Source: SciCrunch Registry

http://www.compudrug.com/toxalert

Software tool for high-throughput toxicity prediction; it assists in the early and quick identification of toxic drug candidates. ToxAlert provides probability percentages for different toxicity endpoints such as oncogenicity, mutagenicity, teratogenicity, neurotoxicity or cell toxicity.

Proper citation: ToxAlert (RRID:SCR_014907) Copy   

•   Source: SciCrunch Registry

https://www.thermofisher.com/order/catalog/product/IQLAAEGAAPFADBMBCX

Mass spectrometer that combines quadrupole, ion trap, and Orbitrap mass analysis.

Proper citation: LTQ-Orbitrap Fusion Tribrid Mass Spectrometer (RRID:SCR_014992) Copy   

•   Source: SciCrunch Registry

https://www.nikoninstruments.com/en_EU/Products/Upright-Microscopes/Research/Eclipse-FN1

Fixed-stage microscope for electrophysiological research. Features include open design, noise reduction, 16x objective lens, and water dipping objective with depth induced aberration correction.

Proper citation: Nikon: Eclipse FN1 Microscope (RRID:SCR_014995) Copy   

•   Source: SciCrunch Registry

https://www.agilent.com/cs/library/datasheets/Public/5991-2541EN.pdf

Hardware system which automates RNA, DNA, and protein sample QC, including sample loading, separation, and imaging.

Proper citation: Agilent: 2200 TapeStation Instrument (RRID:SCR_014994) Copy   

•   Source: SciCrunch Registry

http://www.cepal.org

Regional commission of the United Nations with the purpose of contributing to the economic development of Latin America, coordinating actions directed towards this end, reinforcing economic ties among countries and with other nations, and promoting social development.

Proper citation: Economic Commission for Latin America and the Caribbean (RRID:SCR_014998) Copy   

•   Source: SciCrunch Registry

http://www.multicase.com/meta-pc

Software program to predict metabolic and degradation products of chemicals. METAPC has dictionaries on mammalian metabolism, aerobic microbial degredation, anerobic microbial degredation, and photo degredation.

Proper citation: METAPC (RRID:SCR_014916) Copy   

•   Source: SciCrunch Registry

https://support.illumina.com/sequencing/sequencing_software/bcl2fastq-conversion-software.html

Conversion software developed by Illumina that both demultiplexes data and converts BCL files generated by Illumina sequencing systems to standard FASTQ file formats for downstream analysis.

Proper citation: bcl2fastq (RRID:SCR_015058) Copy   

•   Source: SciCrunch Registry

http://www.oif.org

Foundation for improving the quality of life for people affected by OI through treatment and cure research, education, awareness, and mutual support. OIF lists personal resources for individuals affected by osteogenesis imperfecta as well as professional and clinical resources for researchers.

Proper citation: Osteogenesis Imperfecta Foundation (RRID:SCR_015034) Copy   

•   Source: SciCrunch Registry

https://www.cdc.gov/labstandards/index.html

Standardization program which helps assure the quality of laboratory test data and results so patients, healthcare providers, researchers, and public health officials can be confident that laboratory test results they receive are accurate. CDC services include reference materials, proficiency testing, training, guideline creation, and consultations. Quality assurance and standardization programs can be can be customized by and for users and laboratories.

Proper citation: CDC Laboratory Quality Assurance and Standardization Programs (RRID:SCR_015000) Copy   

•   Source: SciCrunch Registry

https://www.keyence.co.jp/products/microscope/fluorescence-microscope/bz-9000/models/bz-9000/

Microscope system performs fluorescence, bright-field and phase-contrast imaging on various specimen holders. The system allows users to switch between four fluorescent channels, automatically adjusting the filter and exposure time while preserving the longevity of the specimen.

Proper citation: BZ 9000 Fluorescence Microscope (RRID:SCR_015486) Copy   

•   Source: SciCrunch Registry

http://spectrumlabs.com/

Commercial organization which supplies products for bioseparation and cell line management.

Proper citation: Spectrum Labs (RRID:SCR_015488) Copy   

•   Source: SciCrunch Registry

http://mbm.cs.uga.edu/mouse/transcriptome_architecture/

Image collection of transcriptome architecture of adult mouse brain revealed by sparse coding of genome-wide in situ hybridization images.

Proper citation: Transcriptome architecture of adult mouse brain (RRID:SCR_015483) Copy   

•   Source: SciCrunch Registry

http://www.ucsf.edu/

Public research university in San Francisco, California. Part of University of California system. Dedicated entirely to health sciences. Major center of medical and biological research and teaching. Ranked as one of top universities in biomedical field in USA and around world.

Proper citation: University of California at San Francisco; California; USA (RRID:SCR_010605) Copy   

•   Source: SciCrunch Registry