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http://www.ncbi.nlm.nih.gov/genome/viruses/

A database which provides viral and viroid genome sequence data and resource tools. Al viral genomes are downloadable and a complete RefSeq release of viral and viroid genome sequences are available.

Proper citation: NCBI Viral Genomes (RRID:SCR_013789) Copy   

•   Source: SciCrunch Registry

http://neuroml-db.org

The NeuroML database is a curated relational database that provides for the storage and retrieval of computational neuroscience models expressed in NeuroML, which is an extensible XML-based language for describing complex mathematical models of neurons and neuronal networks. NeuroML models are unique in their modular and multi-scale structure, where subcomponents of models can correspond to neuroscience models. In particular, the NeuroML database allows for efficient searches over the components of models and metadata that are associated with a hierarchical NeuroML model description.

Proper citation: NeuroML Database (RRID:SCR_013705) Copy   

•   Source: SciCrunch Registry

http://www.ncbi.nlm.nih.gov/clone/

A database which integrates information about genomic clones and libraries, including sequence data, map positions and distributor information. A clone's standardized name in Clone DB is comprised of its microtiter plate address with plate number row and column, prefixed by the standard library abbreviation, to provide a unique clone name. Libraries with records may be accessed via the genomic or cell-based library browsers.

Proper citation: Clone DB (RRID:SCR_013791) Copy   

•   Source: SciCrunch Registry

http://www.coreldraw.com/us/

Software package for editing and preparation of bitmap and vector graphics

Proper citation: Corel Graphics Suite (RRID:SCR_013674) Copy   

•   Source: SciCrunch Registry

http://ndct.nimh.nih.gov

A database which houses human subjects clinical trial data. NDCT currently contains data on 13,409 subjects and has access to data on 100,500 subjects from the NIMH Data Archive. Users can also sign up for news updates and watch video tutorials.

Proper citation: National Database for Clinical Trials related to Mental Illness (RRID:SCR_013795) Copy   

•   Source: SciCrunch Registry

https://www.leica-microsystems.com/products/microscope-software/details/product/leica-las-x-ls/

Software for image capture, processing and analysis with Leica fluorescence and confocal microscopes.

Proper citation: Leica Application Suite X (RRID:SCR_013673) Copy   

•   Source: SciCrunch Registry

https://drive.google.com/file/d/1hBdRU27fsVkioRZb_IY_8BGPwIi_2ipq/view?usp=drivesdk

Automated, high throughput microscale bioreactor system that replicates laboratory scale bioreactor performance., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

Proper citation: Thermo Fisher: Sartorius: Ambr 15 Cell Culture Generation 2 (RRID:SCR_013797) Copy   

•   Source: SciCrunch Registry

http://contentmine.org

A web application which provides public access to scientific literature through text and data mining.

Proper citation: ContentMine (RRID:SCR_013760) Copy   

•   Source: SciCrunch Registry

http://paperscape.org

A web application tool which visualizes papers collected in arXiv. Users can search for papers and create an interactive graph to organize their resources. The graph shows the relationships between papers, the dates they were published, and other relevant information. Papers can be tagged and graphs can be shared with colleagues.

Proper citation: Paperscape (RRID:SCR_013768) Copy   

•   Source: SciCrunch Registry

http://paperity.org

A web application containing Open Access journals and papers from multiple disciplines. Relevant resources are collected from all fields of research, from the natural and physical sciences to the social sciences and humanities. Users can search for journals and papers or expose their papers to a wider audience.

Proper citation: Paperity (RRID:SCR_013767) Copy   

•   Source: SciCrunch Registry

http://research.mssm.edu/cnic/tools-vias.html

A software application designed to allow multiple stacks of tiled optical sections obtained from Laser Scanning Microscopy to be integrated into a single volumetric dataset. VIAS allows the user to select the individual image stacks from disk and to adjust their relative position on the screen interactively. By using a global 3D coordinate system, users can manipulate stacks and execute the integration of the data after all the stacks of images have been correctly positioned. VIAS was designed with large datasets in mind. The current version of VIAS is Version 2.4, last updated on January 26, 2009.

Proper citation: Volume Integration and Alignment System (RRID:SCR_013800) Copy   

•   Source: SciCrunch Registry

http://pubget.com

A web application which allows users to access life science research articles in PDF format. Users can search across all affiliated institution's subscriptions. Tools are provided to manage papers, which include downloading citations and creating email alerts for new, relevant articles.

Proper citation: PubGet (RRID:SCR_013770) Copy   

•   Source: SciCrunch Registry

http://bangaloreuniversity.ac.in

An institution located in Bangalore focused on higher education. The university has established Gandhi Bhavan, Dr. B.R. Ambedkar Study and Research Centre, and Centre for Study of Social Exclusion and Inclusive policy as well as schools of biological sciences, social sciences, and business studies.

Proper citation: Central College of Bangalore (RRID:SCR_013774) Copy   

•   Source: SciCrunch Registry

http://www.cyto.purdue.edu/flowcyt/software/Winmdi.htm

Software to analyze flow cytometry listmode data files.

Proper citation: WinMDI Software (RRID:SCR_013745) Copy   

•   Source: SciCrunch Registry

http://www.biotek.lipi.go.id

An institutional resource focusing on research in biotechnology. Their goals include becoming a reliable reference in the biotechnological field and improving the performance and professionalism of research institutes.

Proper citation: Biotechnology Culture Collection Institution Pusat Penelitian dan Pengembangan Bioteknologi-LIPI (RRID:SCR_013748) Copy   

•   Source: SciCrunch Registry

http://statpages.org/javasta2.html

A software registry which offers links to various free statistical software programs for stand-alone computing. The software programs are split into different categories: General Packages, Subset Packages, Curve Fitting and Modeling, Biostatistics and Epidemiology, Surveys, Testing and Measurement, Excel Spreadsheets and Add-ins, Programming Languages and Subroutine Libraries, Scripts and Macros, Miscellaneous, and Other Collections.

Proper citation: Free Statistical Software (RRID:SCR_013834) Copy   

•   Source: SciCrunch Registry

https://collage.elsevier.com

A web application which provides the framework for collaborative preparation and publication of computational experiments that can back executable papers. The Collage environment enables researchers to embed chunks of executable code and data into scientific publications and facilitate repeated execution of such codes on underlying computing and data storage resources. Executable papers made with Collage can be embedded into a web site.

Proper citation: Collage Authoring Environment (RRID:SCR_014008) Copy   

•   Source: SciCrunch Registry

http://www.plumanalytics.com

A service resource which provides researchers with metrics around usage, captures, social media, citations, and mentions from various online research outlets. Plum Analytics pulls information from reserch outlets such as journal articles, books, videos, presentations, conference proceedings, datasets, and source code. Plum Analytics also collects metrics for labs, departments, and other research groups. PlumX is a product of Plum Analytics.

Proper citation: Plum Analytics (RRID:SCR_014023) Copy   

•   Source: SciCrunch Registry

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https://www.kaggle.com

A group resource which connects organizations to data scientists who produce accurate predictive models. Kaggle uses competition to incentivize data scientists to create the most accurate and precise predictive models for an organization’s sets of data. The data scientist or team of data scientists who creates the best model is awarded a prize and the organization receives the predictive model.

Proper citation: Kaggle (RRID:SCR_013852) Copy   

•   Source: SciCrunch Registry

http://www.slideshare.net

A collaboration tool which allows users to upload and share presentations, infographics, documents, videos, PDFs, and webinars. Individual slideshows are available for download and are easily uploaded to other websites and blogs.

Proper citation: SlideShare (RRID:SCR_013818) Copy   

•   Source: SciCrunch Registry