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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
University Medical Center Hamburg-Eppendorf Resource Report Resource Website 1+ mentions |
University Medical Center Hamburg-Eppendorf (RRID:SCR_017156) | UKE | university | Teaching hospital of University of Hamburg located in Eppendorf, Hamburg, Germany. | Institution, hospital, teaching, medical, center, Hamburg |
is affiliated with: University of Hamburg; Hamburg; Germany is parent organization of: University Medical Center Hamburg-Eppendorf Bioinformatics Core Facility |
Wikidata:Q316207, ISNI:0000 0001 2180 3484, grid.13648.38 | https://ror.org/01zgy1s35 | SCR_017156 | 2026-07-25 12:08:33 | 4 | ||||||||
|
iNSCOPIX: nVista Resource Report Resource Website 10+ mentions |
iNSCOPIX: nVista (RRID:SCR_017407) | instrument resource | Miniature microscope for imaging calcium activity in neural circuits by Inscopix, Inc. | Minature, microscope, imaging, calcium, activity, neural, circuit, Inscopix, Inc. | PMID:26914316 | Restricted | https://support.inscopix.com/products/nVista | SCR_017407 | 2026-07-25 12:08:37 | 13 | |||||||||
|
Zeiss: LSM 700 microscope Resource Report Resource Website 10+ mentions |
Zeiss: LSM 700 microscope (RRID:SCR_017377) | instrument resource | Laser scanning confocal microscope designed for high-quality imaging of biological and material samples. Member of the seventh generation of confocal microscopes from Carl Zeiss. Point scanning confocal microscope., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | Point, scanning, confocal, microscope, Zeiss | THIS RESOURCE IS NO LONGER IN SERVICE | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_017377.pdf | Model_Number_LSM_700 | https://medicine.ecu.edu/core-imaging/wp-content/pv-uploads/sites/288/2019/10/lsm-700-quick-guide.pdf | https://applications.zeiss.com/C125792900358A3F/0/3B0ABFD289A23BD3C12579060047F817/$FILE/60-1-0022_e_LSM700.pdf | SCR_017377 | LSM 700 Laser Scanning Microscope | 2026-07-25 12:08:32 | 28 | ||||||
|
Suiplus: SSA-II sperm analysis system Resource Report Resource Website 1+ mentions |
Suiplus: SSA-II sperm analysis system (RRID:SCR_017387) | instrument resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on December 1, 2023. System developed under guidance of experts in reproduction and andrology from Andrological Branch of Chinese Medical Association and Research Institute of National Health Planning Commission. Designed according to standard of 5th edition of World Health Organization laboratory manual for examination and processing of human semen. | Reproduction, andrology, Chinese, medical, association, examination, processing, human, semen, Beijing Suijia Software Co., Ltd. | THIS RESOURCE IS NO LONGER IN SERVICE | SCR_017387 | 2026-07-25 12:08:32 | 1 | |||||||||||
|
Brainreader Resource Report Resource Website 1+ mentions |
Brainreader (RRID:SCR_017308) | software resource | Developer of medical software to offer image analysis technologies. Company in Denmark that provides medical image processing software to get quantifiable and accurate insight into brain. | Company, Denmark, medical, image, analysis, processing, software, brain | is affiliated with: Neuroreader | SCR_017308 | brainreader, BrainReader | 2026-07-25 12:08:36 | 3 | ||||||||||
|
3D Genome Resource Report Resource Website 10+ mentions |
3D Genome (RRID:SCR_017525) | service resource | Genome Browser for study of 3D genome organization and gene regulation and data visualization. Used to visualizing chromatin interaction data, browse other omics data such as ChIP-Seq or RNA-Seq for same genomic region, and gain complete view of both regulatory landscape and 3D genome structure for any given gene., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | 3D, genome, organization, gene, regulation, data, visualization, chromatin, interaction, omic, ChIPseq, RNAseq, regulatory, structure |
is related to: Encode has parent organization: Pennsylvania State University |
THIS RESOURCE IS NO LONGER IN SERVICE | SCR_017525 | 2026-07-25 12:08:39 | 20 | ||||||||||
|
IMOTIONS: SMI RED500 Eye Tracker Resource Report Resource Website 1+ mentions |
IMOTIONS: SMI RED500 Eye Tracker (RRID:SCR_017586) | instrument resource | Screen based eye tracker that combines high-speed capabilities at 500 Hz. | Eye, tracker, screen, high, speed, capability, 500Hz | Restricted | SCR_017586 | 2026-07-25 12:08:37 | 1 | |||||||||||
|
Leica: CM1520 Cryostat Resource Report Resource Website 1+ mentions |
Leica: CM1520 Cryostat (RRID:SCR_017543) | instrument resource | Cryostat for routine histology and cryosectioning including critical applications such as Mohs surgery. Brain sectioning. Actively cooled quick freezing shelf with defrost function and refrigeration system are provided. | Leica, cryostat, histology, surgery, brain, sectioning | This product has been discontinued | https://www.leicabiosystems.com/sites/default/files/media_product-download/2022-01/Leica_CM1520_IFU_2v4O_en.pdf | SCR_017543 | 2026-07-25 12:08:34 | 3 | ||||||||||
|
miRPlant Resource Report Resource Website 10+ mentions |
miRPlant (RRID:SCR_012105) | software resource | A user-friendly plant miRNA prediction tool. | applet, unix/linux, mac os x, windows, java, bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools has parent organization: SourceForge |
PMID:25117656 | GNU General Public License | OMICS_05325, biotools:mirplant | https://bio.tools/mirplant | SCR_012105 | 2026-07-25 12:07:28 | 14 | |||||||
|
PyPedal Resource Report Resource Website 1+ mentions |
PyPedal (RRID:SCR_012104) | software resource | A pedigree analysis software package that provides tools for error checking, mathematical analysis, report generation, pedigree simulation, and data visualization. | standalone software |
is listed by: OMICtools has parent organization: SourceForge |
OMICS_05311 | SCR_012104 | 2026-07-25 12:07:27 | 2 | ||||||||||
|
SAT-Assembler Resource Report Resource Website 1+ mentions |
SAT-Assembler (RRID:SCR_012108) | software resource | A targeted gene assembly software program which aims to recover gene families of particular interest to biologists. | standalone software, python |
is listed by: OMICtools has parent organization: SourceForge |
PMID:25122209 | Creative Commons License | OMICS_05397 | SCR_012108 | 2026-07-25 12:07:29 | 3 | ||||||||
|
FingerID Resource Report Resource Website 10+ mentions |
FingerID (RRID:SCR_012077) | software resource | A metabolite identification software using tandem mass spectrometry and kernel methods. | standalone software, matlab, python |
is listed by: OMICtools has parent organization: SourceForge |
PMID:22815355 | GNU General Public License | OMICS_04649 | SCR_012077 | 2026-07-25 12:07:30 | 18 | ||||||||
|
ChiBE Resource Report Resource Website 1+ mentions |
ChiBE (RRID:SCR_012110) | software resource | An editing and visualization software tool for pathway models represented by the BioPAX format, using SBGN Process Description Language, based on Chisio. | mac os x, unix/linux, windows, java |
is listed by: OMICtools has parent organization: Google Code |
PMID:25086704 | Free, Public | OMICS_05454 | SCR_012110 | Chisio BioPAX Editor | 2026-07-25 12:07:27 | 3 | |||||||
|
proTRAC Resource Report Resource Website 10+ mentions |
proTRAC (RRID:SCR_012078) | software resource | A software which detects and analyses piRNA clusters based on quantifiable deviations from a hypothetical uniform distribution regarding the decisive piRNA cluster characteristics. | standalone software, perl |
is listed by: OMICtools has parent organization: SourceForge |
PMID:22233380 | Creative Commons License | OMICS_04874 | SCR_012078 | probabilistic TRacking and Analysis of Clusters | 2026-07-25 12:07:26 | 26 | |||||||
|
MOABS Resource Report Resource Website 100+ mentions |
MOABS (RRID:SCR_012071) | software resource | Software providing a complete, accurate and efficient solution for analysis of large scale base-resolution DNA methylation data, bisulfite sequencing or single molecule direct sequencing. |
is listed by: OMICtools has parent organization: Google Code |
PMID:24565500 | Free, Public | OMICS_04480 | SCR_012071 | MOdel based Analysis of Bisulfite Sequencing data | 2026-07-25 12:07:30 | 242 | ||||||||
|
NetMODE Resource Report Resource Website 1+ mentions |
NetMODE (RRID:SCR_012085) | software resource | Fast motif detection algorithm for subgraph size no more than 6. | standalone software |
is listed by: OMICtools has parent organization: SourceForge |
PMID:23272055 | OMICS_05019 | SCR_012085 | 2026-07-25 12:07:28 | 1 | |||||||||
|
FABIA Resource Report Resource Website 10+ mentions |
FABIA (RRID:SCR_012002) | FABIA | software resource | A model-based technique for biclustering that is clustering rows and columns simultaneously. | bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools |
PMID:20418340 | Free | OMICS_01797, biotools:fabia | https://bio.tools/fabia | SCR_012002 | Factor Analysis for Bicluster Acquisition | 2026-07-25 12:07:24 | 12 | |||||
|
APHL Resource Report Resource Website 10+ mentions |
APHL (RRID:SCR_012001) | APHL | nonprofit organization | Works to strengthen laboratories serving the public''s health in the US and globally. | is listed by: OMICtools | Wikidata: Q4810010, Crossref funder ID: 100008482, ISNI: 0000 0001 0029 6188, OMICS_01790, grid.422961.a | https://ror.org/04d0f7957 | SCR_012001 | Association of Public Health Laboratories | 2026-07-25 12:07:28 | 10 | ||||||||
|
SPINAL Resource Report Resource Website 50+ mentions |
SPINAL (RRID:SCR_012080) | software resource | Algorithm for the problem of globally aligning a pair of protein-protein interaction (PPI) networks. | standalone software, c++ |
is listed by: OMICtools has parent organization: Google Code |
PMID:23413436 | Free, Public | OMICS_04881 | SCR_012080 | 2026-07-25 12:07:30 | 73 | ||||||||
|
MCDL Resource Report Resource Website 1+ mentions |
MCDL (RRID:SCR_012084) | software resource | A small Java molecular viewer/editor for chemical structures, stored in Modular Chemical Descriptor Language linear notation. | applet, mac os x, unix/linux, windows, java |
is listed by: OMICtools has parent organization: SourceForge |
OMICS_05001 | SCR_012084 | 2026-07-25 12:07:26 | 2 |
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Data set from Kravitz, Owen and Kretizer's 2012 paper "Optogenetic identification of striatal projection neuron subtypes during in vivo recordings."
