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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
https://www.illumina.com/systems/sequencing-platforms/miseqdx.html
MiSeqDx System is FDA-regulated, CE-IVD-marked, NGS platform for in vitro diagnostic (IVD) testing. System offers both diagnostic and research modes.
Proper citation: Illumina: MiSeqDx System (RRID:SCR_016380) Copy
https://www.illumina.com/systems/sequencing-platforms/hiseq-x.html
THIS RESOURCE IS NO LONGER IN SERVICE. Documented on November 15,2023. Sequencer for whole-genome sequencing. System consists of HiSeq X ultra-high-throughput instruments that deliver over 18,000 human genomes per year.
Proper citation: Illumina: HiSeq X (RRID:SCR_016385) Copy
https://support.illumina.com/sequencing/sequencing_instruments/hiseq_2500.html
High-throughput sequencing system. High-quality data using proven Illumina SBS chemistry has made it the instrument of choice for major genome centers and research institutions throughout the world.HiSeq 2500 System has been discontinued. Illumina will support the instrument and intends to supply the reagents through February 28, 2023.
Proper citation: Illumina: HiSeq 2500 System (RRID:SCR_016383) Copy
Software as a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data (as well as of even/odd data, i.e. the discrete cosine/sine transforms or DCT/DST).
Proper citation: FFTW (RRID:SCR_016554) Copy
https://github.com/INM-6/NetworkUnit
Library of a test driven framework for formally validating scientific models against experimental data used for validation testing of spiking neuron network simulations on the network activity level.
Proper citation: NetworkUnit (RRID:SCR_016543) Copy
Software application as an integrated web resource of marmoset biological data. Used to find genomic, expression and alternative splicing data to facilitate the study of animal model for neuropsychiatric and social behavior research and to support biological analyses such as functional (ontology) enrichment analysis and protein-protein-network.
Proper citation: CajaDB (RRID:SCR_016506) Copy
https://www.janelia.org/open-science/mimms-10-2016
Modular platform for performing two‐photon laser scanning microscopy (TPLSM) optimized for in vivo applications.
Proper citation: MIMMS microscope 1.0 (2016) (RRID:SCR_016511) Copy
https://www.thermofisher.com/order/catalog/product/00-0210
Scanner for microarray analysis to scan next-generation higher-density arrays, including SNP arrays, tiling arrays for transcription and all-exon arrays for whole-genome analysis.
Proper citation: Thermo Fisher: GeneChip� Scanner 3000 7G (RRID:SCR_016522) Copy
https://dormed.gr/en/product/monica-an24/
Monitors the electrical signals on the patient’s abdomen by using the abdominal fECG and mECG wave shape to uniquely identify and separate the maternal and fetal heart rates.
Proper citation: Dormed Hellas: Monica AN24 (RRID:SCR_016455) Copy
http://www.speciation.net/Database/Instruments/Carl-Zeiss-AG/LIBRA-120-;i672
Electron microscope by Carl Zeiss AG which combines flexibility and ease of use of new control electronics, Windows® based user interface and a vacuum system.
Proper citation: Zeiss: libra 120 transmission electron microscope (RRID:SCR_016703) Copy
Instrument provides acquisition of up to 12 parameters with optical design for enhanced sensitivity for multicolor assays. With customized forward scatter, to achieve accurate size measurement, and optimized electronics for high resolution and fast, accurate processing for researchers needs.
Proper citation: Gallios: Flow Cytometer (RRID:SCR_016702) Copy
https://www.a-msystems.com/p-285-model-2100-isolated-pulse-stimulator.aspx
Instrument used for a variety of physiological stimulation protocols, including behavioral feedback, LTP/LTD, lesion making, electrode marking, ultrafast timing applications, orthodromic/antidromic stimulation, and kindling. Used in a neurophysiological and physiological experiment protocols.
Proper citation: A-M SYSTEMS: Model 2100 Isolated Pulse Stimulator (RRID:SCR_016677) Copy
https://www.colinst.com/oxymax-clams
Instrumentation for monitoring behavior and physiology in lab animals by Columbus Instruments. Used for simultaneous multi parameter assessment of 1 to 32 test animals with automated operation for experiments lasting up to three days.
Proper citation: Columbus Instruments: Oxymax-CLAMS (RRID:SCR_016718) Copy
Instrument for cell sorting by BD Biosciences where positive air pressure forces sample cell through an optically gel-coupled cuvette . Hydrodynamic focusing guides particles in a single-file stream through the cuvette, where laser light intercepts the stream at the sample interrogation point.Fluorescence activated cell sorting instrument. Flow cytometer as high speed fixed alignment benchtop cell sorter. Enables multicolor analysis of up to 13 fluorescent markers and two scatter parameters at time.
Proper citation: BD Biosciences: FACSAria III Cell Sorter (RRID:SCR_016695) Copy
http://www.mi.med.osaka-u.ac.jp/gpetview/gpetview.html
GpetView is light-weight image viewer based on Gtk+ library. The supported image format is ANALYZE(TM) format (Mayo Foundation ). GpetView can run on Unix-systems, such as Linux, Solaris, IRIX, Mac OS-X etc. From Version 2.0, GpetView can also run on Win32 system, if you have installed Glib and Gtk+(2.x). Glib andGtk+ can be found at http://www.gtk.org. For Windows users, you can find Gtk+ libraries at http://gladewin32.sourceforge.net/modules/news/ GpetView has the following features: * very light-weight * view images as transverse, coronal, or sagittal * change color-map (support Analyze lkup file) * zoom images * ROI (Region-Of-Interest) with shapes of circle, ellipse, rectangle, polygon and automatic edge detection * Image histogram and profile Sponsors: This resource is supported by Osaka University. Keywords: Image, Viewer, Software, Transverse, Coronal, Sagittal, Map, Histogram,
Proper citation: Gtk-based Analyze Image Viewer (RRID:SCR_013282) Copy
The American Association of Neurological Surgeons is dedicated to advancing the specialty of neurological surgery and serving as the spokes organization for all practitioners of the specialty of neurosurgery, in order to provide the highest quality of care to our patients. :Founded in 1931 as the Harvey Cushing Society, the American Association of Neurological Surgeons (AANS) is a scientific and educational association with over 7,400 members worldwide. The AANS is dedicated to advancing the specialty of neurological surgery in order to provide the highest quality of neurosurgical care to the public. All Active members of the AANS are board certified by the American Board of Neurological Surgery, the Royal College of Physicians and Surgeons of Canada, or the Mexican Council of Neurological Surgery, A.C. Neurosurgery is the medical specialty concerned with the prevention, diagnosis, treatment and rehabilitation of disorders that affect the spinal column, spinal cord, brain, nervous system and peripheral nerves. For more information on what neurosurgeons do, visit our public pages at : :www.NeurosurgeryToday.org : : :. Visitors to our Web site can find Member Counts under membership including demographic details.
Proper citation: American Association of Neurological Surgeons (RRID:SCR_013209) Copy
http://www.bioconductor.org/packages//2.10/bioc/html/HiTC.html
Software package to explore high-throughput ''C'' data such as 5C or Hi-C.
Proper citation: HiTC (RRID:SCR_013175) Copy
http://sourceforge.net/projects/conifer/
Uses exome sequencing data to find copy number variants (CNVs) and genotype the copy-number of duplicated genes.
Proper citation: CoNIFER (RRID:SCR_013213) Copy
http://rdxplorer.sourceforge.net/
A computational tool for copy number variants (CNV) detection in whole human genome sequence data using read depth (RD) coverage.
Proper citation: RDXplorer (RRID:SCR_013290) Copy
http://cbi.labri.fr/Genolevures
THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 24,2023. It provides annotated sequence data and classifications for the genomes of eighteen species of hemiascomycete yeasts, including nine complete genomes. The Gnolevures web resources provides genetic element pages, orthologs defined by syntenic homology, protein families, a genome browser for interspecies comparison, and data sets for downloading. An advanced search facility permits a number of criterion-based and full text queries. Classification data, including protein families and orthologs, and the most up-to-date genome annotations, are for the most part not available in general-purpose sequence data bases such as EMBL/GenBank/DDBJ.
Proper citation: Genolevures (RRID:SCR_013173) Copy
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