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http://bioinformatics.childhealthresearch.org.au/software/fusionfinder/

A perl-based software package, which can be used to find fusion transcript candidates in RNA-Seq data.

Proper citation: FusionFinder (RRID:SCR_011894) Copy   

•   Source: SciCrunch Registry

http://guide.wehi.edu.au

A desktop application for the bench biologists to analyse RNA-Seq and microarray expression data. It performs gene-centric analyses such as differential expression and pathways using well-established R modules, integrates data from multiple sources, and enables editing of R commands., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

Proper citation: Guide (RRID:SCR_011903) Copy   

•   Source: SciCrunch Registry

http://www.unav.es/genetica/oncofuse.html

Software tool designed to predict the oncogenic potential of fusion genes found by Next-Generation Sequencing in cancer cells.

Proper citation: Oncofuse (RRID:SCR_011904) Copy   

•   Source: SciCrunch Registry

http://bioinformatics.mdanderson.org/main/PRADA:Overview

A pipeline to analyze paired end RNA-Seq data to generate gene expression values (RPKM) and gene-fusion candidates.

Proper citation: PRADA (RRID:SCR_011906) Copy   

•   Source: SciCrunch Registry

https://mcdonaldlab.biology.gatech.edu/r-sap/

An automated bioinformatics pipeline that analyzes and quantitates high-throughput RNA-Seq datasets.

Proper citation: R-SAP (RRID:SCR_011907) Copy   

•   Source: SciCrunch Registry

http://mapman.gabipd.org/web/guest/robin

Software package for RNA-Seq-based transcriptomics. Used to analyse Illumina/Solexa-based RNA-Seq data, Affymetrix data and generic tabular two color or single channel array data. Offers variety of quality control methods that can be used to gain overview of experimental data technical quality and structure.

Proper citation: RobiNA (RRID:SCR_011908) Copy   

•   Source: SciCrunch Registry

https://code.google.com/p/rseqflow/

An RNA-Seq analysis pipeline which offers an express implementation of analysis steps for RNA sequencing datasets.

Proper citation: RseqFlow (RRID:SCR_011909) Copy   

•   Source: SciCrunch Registry

http://1001genomes.org/software/shore.html

A mapping and analysis pipeline for short read data produced on the Illumina platform.

Proper citation: SHORE (RRID:SCR_011863) Copy   

•   Source: SciCrunch Registry

http://www.optimaldesign.com/ArrayMiner/ArrayMiner.htm

A set of analysis tools using advanced algorithms to reveal the true structure of your gene expression data.

Proper citation: ArrayMiner (RRID:SCR_011955) Copy   

•   Source: SciCrunch Registry

http://www.speciation.net/Database/Instruments/Carl-Zeiss-AG/LIBRA-120-;i672

Electron microscope by Carl Zeiss AG which combines flexibility and ease of use of new control electronics, Windows® based user interface and a vacuum system.

Proper citation: Zeiss: libra 120 transmission electron microscope (RRID:SCR_016703) Copy   

•   Source: SciCrunch Registry

https://corefacilities.iss.it/dw/lib/exe/fetch.php?media=aree:citometria:strumentazione:gallios-brochure.pdf

Instrument provides acquisition of up to 12 parameters with optical design for enhanced sensitivity for multicolor assays. With customized forward scatter, to achieve accurate size measurement, and optimized electronics for high resolution and fast, accurate processing for researchers needs.

Proper citation: Gallios: Flow Cytometer (RRID:SCR_016702) Copy   

•   Source: SciCrunch Registry

https://www.a-msystems.com/p-285-model-2100-isolated-pulse-stimulator.aspx

Instrument used for a variety of physiological stimulation protocols, including behavioral feedback, LTP/LTD, lesion making, electrode marking, ultrafast timing applications, orthodromic/antidromic stimulation, and kindling. Used in a neurophysiological and physiological experiment protocols.

Proper citation: A-M SYSTEMS: Model 2100 Isolated Pulse Stimulator (RRID:SCR_016677) Copy   

•   Source: SciCrunch Registry

https://www.colinst.com/oxymax-clams

Instrumentation for monitoring behavior and physiology in lab animals by Columbus Instruments. Used for simultaneous multi parameter assessment of 1 to 32 test animals with automated operation for experiments lasting up to three days.

Proper citation: Columbus Instruments: Oxymax-CLAMS (RRID:SCR_016718) Copy   

•   Source: SciCrunch Registry

https://www.bdbiosciences.com/en-us/products/instruments/flow-cytometers/research-cell-sorters/bd-facsaria-iii

Instrument for cell sorting by BD Biosciences where positive air pressure forces sample cell through an optically gel-coupled cuvette . Hydrodynamic focusing guides particles in a single-file stream through the cuvette, where laser light intercepts the stream at the sample interrogation point.Fluorescence activated cell sorting instrument. Flow cytometer as high speed fixed alignment benchtop cell sorter. Enables multicolor analysis of up to 13 fluorescent markers and two scatter parameters at time.

Proper citation: BD Biosciences: FACSAria III Cell Sorter (RRID:SCR_016695) Copy   

•   Source: SciCrunch Registry

https://www.apple.com/numbers/

Software tool to create spreadsheets that include tables and images. You can use Apple Pencil on your iPad to add diagrams and colorful illustrations.

Proper citation: Numbers (RRID:SCR_016950) Copy   

•   Source: SciCrunch Registry

https://github.com/tarokiritani/WhiskerTracking

ImageJ plugins and macros for whisker tracking. Set of Fiji plugins and macros for tracking a single whisker.

Proper citation: Whisker tracking macro (RRID:SCR_016953) Copy   

•   Source: SciCrunch Registry

https://affinity.serif.com/en-us/photo/

Software tool for professional photo editing.

Proper citation: Affinity Photo (RRID:SCR_016951) Copy   

•   Source: SciCrunch Registry

https://www.olympus-global.com/technology/museum/micro/2004/

FV1000 confocal laser scanning biological microscope features twin scan system which enables spectroscopy of living intercellular contents and analysis of objects down to a 2nm wavelength resolution. Image size is increased to 4096x4096 pixels.

Proper citation: Olympus: FV1000 Confocal Microscope (RRID:SCR_016840) Copy   

•   Source: SciCrunch Registry

https://www.leicabiosystems.com/us/histology-equipment/cryostats/leica-cm3050-s/

Instrument designed for cryosectioning in biomedical, neuro-anatomical and pharmaceutical research.

Proper citation: Leica: CM3050 S Research Cryostat (RRID:SCR_016844) Copy   

•   Source: SciCrunch Registry

https://www.btxonline.com/products/electroporation-systems/ecm-830-square-wave-electroporation-system.html

ECM 830 is a square wave pulse generator designed for in vitro and in vivo applications for gene, drug and protein delivery for mammalian cells, zebra fish tissue and embryos, nuclear transfer, embryo manipulation, plant protoplast and basic bacteria and yeast transformations. Used in ECM 830 SQUARE WAVE ELECTROPORATION SYSTEM.

Proper citation: HBio: Multichallel Systems: Electro Square Porator ECM 830, BTX (RRID:SCR_016841) Copy   

•   Source: SciCrunch Registry