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http://www.jacksonimmuno.com/

A commercial antibody vendor, specializing in secondary antibodies.

Proper citation: Jackson ImmunoResearch (RRID:SCR_010488) Copy   

•   Source: SciCrunch Registry

http://www.ctmm.nl/en/programmas/infrastructuren/traitprojecttranslationeleresearch

An ambitious project to develop an IT infrastructure for translational research that aims to facilitate the collection, storage, analysis, archiving, sharing and securing of data.

Proper citation: TraIT (RRID:SCR_010493) Copy   

•   Source: SciCrunch Registry

http://www.bio.ifi.lmu.de/contextmap

A context-based approach to identify the most likely mapping for RNA-seq experiments.

Proper citation: ContextMap (RRID:SCR_010496) Copy   

•   Source: SciCrunch Registry

http://crac.gforge.inria.fr/

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on February 28,2023. Integrated RNA-Seq read analysis., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

Proper citation: CRAC (RRID:SCR_010652) Copy   

•   Source: SciCrunch Registry

https://scicrunch.org/

THIS RESOURCE IS NO LONGER IN SERVICE. Documented September 15, 2017.

Funding opportunities provided by projects or organizations other than government funding opportunities such as those from NIH or NSF.

Proper citation: Community Pilot Funding Opportunity (RRID:SCR_010506) Copy   

•   Source: SciCrunch Registry

http://www.adipogen.com

An Antibody supplier,

Proper citation: AdipoGen (RRID:SCR_010507) Copy   

•   Source: SciCrunch Registry

http://www.diffusiontools.com/documentation/poas.html

Software toolbox for SPM to denoise diffusion MRI data. Used for diffusion weighted magnetic resonance imaging data enhancement based on structural adaptive smoothing in both voxel space and diffusion-gradient space.Part of the ACID-toolbox.

Proper citation: POAS4SPM (RRID:SCR_010469) Copy   

•   Source: SciCrunch Registry

http://mvz.berkeley.edu/

The Museum of Vertebrate Zoology (MVZ) at the University of California, Berkeley, is a center for research and education in the biology of amphibians, reptiles, birds, and mammals. Founded in 1908, the Museum''s mission is to document and increase understanding of the diversity of terrestrial vertebrates, with particular emphasis on western North America. An MVZ Video Gallery is also available. The superb collections are at the heart of the MVZ program, where methods of field biology are combined with modern laboratory techniques and analytical methods in a comprehensive, synthetic approach. Our goals are to remain at the forefront of international research on evolutionary biology from the perspectives of systematics, ecology, behavior, functional and developmental morphology, population biology, and evolutionary genomics, and to lead the way in developing and using major natural history collections for research, education, and solving problems in biodiversity conservation. Because the MVZ was founded upon a philosophy that organisms should be studied in relationship to their natural environments, its collections are supplemented by extensive ancillary information (e.g., field notes, habitat photographs, tape-recorded vocalizations) that is connected to specimens and/or tissues and enhances their value to researchers. This concept was pioneered at the MVZ and continues to be the primary focus of current research efforts. To this end, there are strong research links between the Museum and the 2,000 acre MVZ/UC field station at Hastings Natural History Reservation. In addition, the MVZ is actively engaged in developing concepts and tools for Biodiversity Informatics through collaborations across the Berkeley Natural History Museums and international consortia.

Proper citation: Museum of Vertebrate Zoology (RRID:SCR_010595) Copy   

•   Source: SciCrunch Registry

http://www.abbvie.com/

A research-based biopharmaceutical company that develops advanced therapies to address global health problems.

Proper citation: AbbVie (RRID:SCR_010484) Copy   

•   Source: SciCrunch Registry

http://www.cos.uni-heidelberg.de/index.php/n.ha

Software for detecting Co-Occurrence and Spatial Arrangement of Transcription Factor Binding Motifs in Genome-Wide Datasets.

Proper citation: COPS (RRID:SCR_010852) Copy   

•   Source: SciCrunch Registry

http://wanglab.pcbi.upenn.edu/coral/

A machine learning software package that can predict the precursor class of small RNAs present in a high-throughput RNA-sequencing dataset. In addition to classification, it also produces information about the features that are most important for discriminating different populations of small non-coding RNAs.

Proper citation: CoRAL - Classification of RNAs by Analysis of Length (RRID:SCR_010828) Copy   

•   Source: SciCrunch Registry

http://paed.hku.hk/uploadarea/yangwl/html/software.html

A toolkit for prioritizing SNVs and indels from next-generation sequencing data.

Proper citation: PriVar (RRID:SCR_010784) Copy   

•   Source: SciCrunch Registry

http://compbio.cs.toronto.edu/CNVer/

A method for CNV detection that supplements the depth-of-coverage with paired-end mapping information, where matepairs mapping discordantly to the reference serve to indicate the presence of variation.

Proper citation: CNVer (RRID:SCR_010820) Copy   

•   Source: SciCrunch Registry

http://sv.gersteinlab.org/cnvnator/

An approach to discover, genotype, and characterize typical and atypical CNVs from family and population genome sequencing.

Proper citation: CNVnator (RRID:SCR_010821) Copy   

•   Source: SciCrunch Registry

http://bioinfo-out.curie.fr/projects/freec/tutorial.html

Prediction of copy number alterations and loss of heterozygosity using deep-sequencing data.

Proper citation: Control-FREEC (RRID:SCR_010822) Copy   

•   Source: SciCrunch Registry

http://code.google.com/p/readdepth/

This package for R can detect copy number aberrations by measuring the depth of coverage obtained by massively parallel sequencing of the genome.

Proper citation: readDepth (RRID:SCR_010824) Copy   

•   Source: SciCrunch Registry

https://sites.google.com/site/vibansal/software/hapcut

A max-cut based algorithm for haplotype assembly using sequence reads from the two chromosomes of an individual.

Proper citation: HapCUT (RRID:SCR_010791) Copy   

•   Source: SciCrunch Registry

http://www.popgen.dk/software/index.php/Relate

Software providing a method that estimates the probability of sharing alleles identity by descent (IBD) across the genome and can also be used for mapping disease loci using distantly related individuals.

Proper citation: Relate (RRID:SCR_010794) Copy   

•   Source: SciCrunch Registry

http://mirexpress.mbc.nctu.edu.tw/

A stand-alone software package implemented for generating miRNA expression profiles from high-throughput sequencing of RNA without the need for sequenced genomes.

Proper citation: miRExpress (RRID:SCR_010831) Copy   

•   Source: SciCrunch Registry

http://hugeseq.snyderlab.org/

An automated pipeline for detecting genetic variants from High-throUghput GEnome SEQuencing.

Proper citation: HugeSeq (RRID:SCR_010803) Copy   

•   Source: SciCrunch Registry