Searching the RRID Resource Information Network
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
University of Reading; Reading; United Kingdom Resource Report Resource Website 1+ mentions |
University of Reading; Reading; United Kingdom (RRID:SCR_007135) | university | Public university in Reading, Berkshire, England. It was founded in 1892 as University College, Reading, a University of Oxford extension college. |
is parent organization of: Catalogue of Life is parent organization of: neuroade is parent organization of: Species 2000 is parent organization of: Neuromantic |
Crossref funder ID:501100000839, Wikidata:Q1432632, ISNI:0000 0004 0457 9566, grid.9435.b, nlx_99449 | https://ror.org/05v62cm79 | SCR_007135 | 2026-09-03 04:49:12 | 8 | ||||||||||
|
Osprey: Network Visualization System Resource Report Resource Website 10+ mentions |
Osprey: Network Visualization System (RRID:SCR_007138) | data processing software, data visualization software, simulation software, software application, software resource | Osprey is a software platform for visualization of complex interaction networks. Osprey builds data-rich graphical representations from Geno Ontology (GO) annotated interaction data maintained by The Grid. The following list describes some of the important characteristics of the Osprey Network Visualization System: * Portability ( cross platform availability ) o Osprey is available on almost all Platforms that support the latest Java Plugin * Tools for Biological Analysis o Osprey provides many features such as network filters, connectivity filters, advanced layouts, and dataset superimposing which are extremely useful to biologists who are interested in analyzing their data * Powerful Support Database o Integrated with Osprey is a powerful database of interactions and annotation, see section 8. The GRID ( The General Repository of Interaction Datasets ). * Ease of use o Osprey provides an extremely user friendly interface for working with interaction data * Online Database Add-on Ability o Osprey can be incorporated as a standard visualization tool with online databases such as The GRID * Support for figures o Osprey networks can be saved in SVG, PNG and JPG format so they can be used with image programs Sponsors: Development of Osprey was funded by a grant from the Canadian Institutes of Health Research. | filter, biological analysis, biologist, interaction, software, visualization | nif-0000-10394 | SCR_007138 | Osprey | 2026-09-03 04:49:26 | 27 | ||||||||||
|
BioRAT Resource Report Resource Website 1+ mentions |
BioRAT (RRID:SCR_007099) | BioRAT | software application, software resource, text extraction software, text-mining software | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on June 1,2023. An information extraction (IE) tool specifically designed to perform biomedical IE and which is able to locate and analyze both abstracts and full-length papers. BioRAT is a Biological Research Assistant for Text mining, and incorporates a document search ability with domain-specific IE. | information extraction, search engine, biomedical, abstract, full-length paper |
is listed by: OMICtools is related to: Comparative Toxicogenomics Database (CTD) has parent organization: University College London; London; United Kingdom |
PMID:15231534 | THIS RESOURCE IS NO LONGER IN SERVICE | SCR_013452, nif-0000-21061, OMICS_01175 | SCR_007099 | Biological Research Assistant for Text mining | 2026-09-03 04:48:56 | 1 | ||||||
|
Magnetics Information Consortium Resource Report Resource Website 10+ mentions |
Magnetics Information Consortium (RRID:SCR_007098) | MagIC | data or information resource, data repository, database, service resource, software resource, storage service resource | Databases that accept and provide access to paleomagnetic and rock magnetic data. The paleomagnetic data range from individual measurements to specimen, sample or site level results, including a wide variety of derived parameters or associated rock magnetic measurements. The rock magnetic database includes data collected during rock magnetic experiments on remanence, anisotropy, hysteresis and susceptibility. The MagIC Console Software provides an effective environment in Microsoft Excel where users can collate and prepare their paleomagentic and rock magnetic data for uploading in the Online MagIC Database. | paleomagnetism, rock, magnetic, paleomagnetic, geomagnetic, rock magnetic |
is listed by: CINERGI has parent organization: San Diego Supercomputer Center |
NSF EAR 0202996; NSF EAR-IF 0318672-0744107-0744108 |
Non-commercial, For scientific or educational purposes, Acknowledgement required, Copyrighted, The community can contribute to this resource | nlx_154712, SciRes_000151, r3d100011910 | https://doi.org/10.17616/R3NM0W | SCR_007098 | Magnetics Information Consortium (MagIC), MagIC Portal, MagIC database | 2026-09-03 04:49:07 | 34 | |||||
|
Chromosome 7 Annotation Project Resource Report Resource Website 10+ mentions |
Chromosome 7 Annotation Project (RRID:SCR_007134) | Chromosome 7 Annotation Project | data or information resource, data repository, database, service resource, storage service resource | Database containing the DNA sequence and annotation of the entire human chromosome 7, encompassing nearly 158 million nucleotides of DNA and 1917 gene structures, are presented; the most up to date collation of sequence, gene, and other annotations from all databases (eg. Celera published, NCBI, Ensembl, RIKEN, UCSC) as well as unpublished data. To generate a higher order description, additional structural features such as imprinted genes, fragile sites, and segmental duplications were integrated at the level of the DNA sequence with medical genetic data, including 440 chromosome rearrangement breakpoints associated with disease. The objective of this project is to generate a comprehensive description of human chromosome 7 to facilitate biological discovery, disease gene research and medical genetic applications. There are over 360 disease-associated genes or loci on chromosome 7. A major challenge ahead will be to represent chromosome alterations, variants, and polymorphisms and their related phenotypes (or lack thereof), in an accessible way. In addition to being a primary data source, this site serves as a weighing station for testing community ideas and information to produce highly curated data to be submitted to other databases such as NCBI, Ensembl, and UCSC. Therefore, any useful data submitted will be curated and shown in this database. All Chromosome 7 genomic clones (cosmids, BACs, YACs) listed in GBrowser and in other data tables are freely distributed. | duplication, gene expression, family, fish, gene, gene annotation, genome, breakpoint, chromosome, chromosome 7, clinical, deletion, disease, dna sequence, human, insertion, inversion, polymorphism, rearrangement, segmental duplication, snp, translocation, annotation, data analysis service, blat, cosmid, bac, yac, biomaterial supply resource, malignant, non malignant, bio.tools |
is listed by: One Mind Biospecimen Bank Listing is listed by: Debian is listed by: bio.tools |
PMID:12690205 | Free, (Genomic clones) | nif-0000-03550, biotools:chr7, r3d100012136 | https://bio.tools/chr7, https://doi.org/10.17616/R3VP9V | SCR_007134 | The Chromosome 7 Annotation Project, Chromosome 7 Annotation Project | 2026-09-03 04:49:08 | 13 | |||||
|
Eurofungbase Resource Report Resource Website |
Eurofungbase (RRID:SCR_007094) | Eurofung | knowledge environment | The Eurofung project is a Coordination Action with the aim of developing a strategy to build up and maintain an integrated, sustainable European genomic database required for innovative genomics research of filamentous fungal model organisms of interest. This database will become a crystallization point for related systems and then could be integrated and conserved in a central European genomic database. The consortium counts 32 member laboratories, three of which have partner status. A Fungal Industrial Platform (FIP) of 13 members is also associated with the project. The project focuses on several filamentous fungi for different reasons. Aspergillus nidulans has a long record of use as a fungal model organism. Aspergillus niger, Trichoderma reesei and Penicillium chrysogenum are important cell factories used for the production of enzymes and metabolites including compounds such as Beta-lactams with benefits to human health. The human pathogen Aspergillus fumigatus serves not only as a model pathogen, but becomes more and more a serious threat to human health. The project contributes to create the conditions and facilities within Europe to widely apply all genomics technologies in filamentous fungal research. This will greatly expand our knowledge about filamentous fungi. This new genomics information will thus be beneficial to European biotechnology industries and help to improve the prevention and treatment of fungal disease. Expected results: The main results expected from this project are: - The contribution of the community to the manual annotation of important fungal genomes through annotation jamborees. - The realization of an integrated sustainable fungal genomic database through collaboration with bioinformatics centers and incorporation of the community data. - The realization of a fungal genomics knowledge base for the Eurofungbase community and the European fungal biotech industry through meetings, workshops and web-based information. - Intensified collaboration between the members of the network including the participating industries, thus strengthening the infrastructure for high quality fungal genomics research in Europe and furthermore determining joint research targets for the future. -Individualized training of a next generation of young scientists in fungal genomics and biotechnological research. | European Union LSSG-CT-2005-018964 | nlx_20616 | SCR_007094 | Eurofung | 2026-09-03 04:49:00 | 0 | |||||||||
|
Cell Culture Ontology Resource Report Resource Website 1+ mentions |
Cell Culture Ontology (RRID:SCR_007096) | CCONT | controlled vocabulary, data or information resource, ontology | ontology for the formal representation of cell lines and their correspnding culture conditions. | owl | is listed by: BioPortal | nlx_157354 | SCR_007096 | 2026-09-03 04:49:25 | 1 | |||||||||
|
Neurodatabase.org Resource Report Resource Website 1+ mentions |
Neurodatabase.org (RRID:SCR_007091) | data or information resource, data repository, database, service resource, storage service resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented on June 09, 2015. A repository of neurophysiology data conforming to BrainML data models and protocols: BrainML-formatted experimental data submissions are published in searchable, browsable form. Registered users may submit new experiments. The site contains spike trains, voltage time series, and some derived histograms from single cell and multi-unit activity. The database focuses on in vivo somatosensory and visual activity during task performance. This resource contains only a few datasets, but they are of high quality and have been used for reanalysis by several parties. There are three primary interfaces for querying data from this repository: a web-based browse interface, a web-based HTML query form, and a Java web start desktop application. In addition, there is an XML interface useful for direct access by software clients. To download the source code, please read and acknowledge the license agreement. | neurophysiology, source code, spike train, voltage time series, histogram, single cell, multi-unit, in vivo, somatosensory, visual, task, data set |
uses: BrainML is used by: NIF Data Federation has parent organization: Weill Cornell Medical College; New York; USA |
THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-00001 | http://neurodatabase.org/dataserver/goto.do?page=.home | SCR_007091 | Neurodatabase.org: Laboratory of Neuroinformatics Weill Medical College, Neurodatabase, neurodatabase.org Laboratory of Neuroinformatics Weill Medical College of Cornell University, LNI: neurodatabase.org | 2026-09-03 04:49:07 | 7 | |||||||
|
Genes to Cognition: Neuroscience Research Programme Resource Report Resource Website 10+ mentions |
Genes to Cognition: Neuroscience Research Programme (RRID:SCR_007121) | data or information resource, portal, topical portal | A neuroscience research program that studies genes, the brain and behavior in an integrated manner, established to elucidate the molecular mechanisms of learning and memory, and shed light on the pathogenesis of disorders of cognition. Central to G2C investigations is the NMDA receptor complex (NRC/MASC), that is found at the synapses in the central nervous system which constitute the functional connections between neurons. Changes in the receptor and associated components are thought to be in a large part responsible for the phenomenon of synaptic plasticity, that may underlie learning and memory. G2C is addressing the function of synapse proteins using large scale approaches combining genomics, proteomics and genetic methods with electrophysiological and behavioral studies. This is incorporated with computational models of the organization of molecular networks at the synapse. These combined approaches provide a powerful and unique opportunity to understand the mechanisms of disease genes in behavior and brain pathology as well as provide fundamental insights into the complexity of the human brain. Additionally, Genes to Cognition makes available its biological resources, including gene-targeting vectors, ES cell lines, antibodies, and transgenic mice, generated for its phenotyping pipeline. The resources are freely-available to interested researchers. | cognition, gene, neuroscience |
is listed by: 3DVC has parent organization: Wellcome Trust Sanger Institute; Hinxton; United Kingdom |
Wellcome Trust ; MRC ; BBSRC ; Gatsby Charitable Foundation ; Human Frontiers Science Programme ; European Union ; Framework Programme ; EPSRC ; NSF |
nif-0000-10235 | SCR_007121 | G2C Neuroscience Research Program, G2C Research Programme, Genes to Cognition: Neuroscience Research Program, Genes to Cognition, G2C, Genes to Cognition - Neuroscience Research Programme, Genes to Cognition-Neuroscience Research Programme, G2C Research Program | 2026-09-03 04:49:01 | 20 | ||||||||
|
HCV Immunology Database Resource Report Resource Website 1+ mentions |
HCV Immunology Database (RRID:SCR_007086) | HCV Immunology Database | analysis service resource, data analysis service, data or information resource, database, production service resource, service resource | The HCV Immunology Database contains a curated inventory of immunological epitopes in HCV and their interaction with the immune system, with associated retrieval and analysis tools. The funding for the HCV database project has stopped, and this website and the HCV immunology database are no longer maintained. The site will stay up, but problems will not be fixed. The database was last updated in September 2007. The HIV immunology website contains the same tools, and may be usable for non-HCV-specific analyses. For new epitope information, users of this database can try the Immuno Epitope Database (http://www.immuneepitope.org). | epitope, immune system, hepatitis c virus, hepatitis c, immunology, t cell, protein, alignment, antibody, binding site | has parent organization: HCV Databases | Hepatitis C | NIAID | PMID:16309340 | The data and some of the HCV database tools are available for download for non-commercial use. | nlx_151412 | SCR_007086 | Los Alamos Hepatitis C Immunology Database, Hepatitis C Virus Immunology Database, Hepatitis C Immunology Database | 2026-09-03 04:49:06 | 5 | ||||
|
swDMR Resource Report Resource Website 10+ mentions |
swDMR (RRID:SCR_007316) | swDMR | software resource | A free software using a sliding-window approach to identify differentially methylated regions (DMR) from whole-genome bisulfite sequencing. |
is listed by: OMICtools has parent organization: Google Code |
Apache License | OMICS_00625 | SCR_007316 | 2026-09-03 04:49:18 | 24 | |||||||||
|
NIA Aged Rodent Colonies Resource Report Resource Website 10+ mentions |
NIA Aged Rodent Colonies (RRID:SCR_007317) | Aged Rodent Colonies | biomaterial supply resource, material resource, organism supplier | Colonies of barrier-raised, Specific Pathogen-Free (SPF) rodents under contractual arrangement with commercial vendors, specifically for use in aging research. They are not available for use as a general source of adult animals for unrelated areas of research. Animals from the NIA aged rodent colonies are available to investigators at academic and non-profit research institutions under the terms described on the Eligibility Criteria page. Orders must be submitted through the online rodent ordering system (ROS) (http://arc.niapublications.org/acb/stores/1/). Available strains: * Inbred Rats: Fischer 344 (F344), Brown Norway (BN) * Hybrid Rats: F344xBN F1 (F344BN); * Inbred Mice: BALB/cBy, CBA, C57BL/6, DBA/2 * Hybrid Mice: CB6F1 (BALB/cBy x C57BL/6), B6D2F1 (C57BL/6 x DBA/2) * Caloric Restricted Rats: F344 (males only), F344BN F1 (males only) * Caloric Restricted Mice: C57BL/6; B6D2F1 (males only) | rodent, inbred mouse strain, inbred rat strain, hybrid rat strain, hybrid mouse strain, caloric restricted, male, mouse strain, adult mouse, rat strain |
is listed by: One Mind Biospecimen Bank Listing is related to: NIA Aged Rodent Tissue Bank has parent organization: NIA Scientific Resources |
Aging, Inbred mouse strain, Inbred rat strain, Hybrid rat strain, Hybrid mouse strain, Caloric Restricted | NIA ; NIH Blueprint for Neuroscience Research |
Public: For use in aging research only. Available to investigators at academic and non-profit research institutions - see Eligibility Criteria page. | nif-0000-00184 | http://www.nia.nih.gov/ResearchInformation/ScientificResources/default.htm | SCR_007317 | NIA Aged Rodent Colonies Handbook, Aged Rodent Colonies Handbook, Aging-Related Rodent Colonies, Aging-Related Rat Colonies | 2026-09-03 04:49:08 | 26 | ||||
|
Deltagen and Lexicon Knockout Mice and Phenotypic Data Resource Resource Report Resource Website |
Deltagen and Lexicon Knockout Mice and Phenotypic Data Resource (RRID:SCR_007312) | Deltagen and Lexicon Knockout Mice | biomaterial supply resource, material resource, organism supplier | Repository of knockout mice that have been extensively characterized. For each mouse line, the contractors will provide not only the mouse line itself, but also detailed, objective data on the impact of the specific gene deletion on the mouse''s phenotype, which includes appearance, health, fitness, behavior, ability to reproduce, and radiological and microscopic data. Such comprehensive information on such a large group of mice has never been available to public sector researchers, and is expected to greatly accelerate efforts to explore gene functions in health and disease. This resource will give researchers unprecedented access to two private collections of knockout mice, providing valuable models for the study of human disease and laying the groundwork for a public, genome-wide library of knockout mice. The contracts also provide for the opportunity for NIH to obtain up to 1500 additional mouse lines and phenotypic data over the next three years, pending available funds. The new contracts provide NIH with irrevocable, perpetual, worldwide, royalty-free licenses to use and distribute to academic and non-profit researchers these lines of knockout mice. The mouse lines, which will be stored in the form of frozen embryos, frozen sperm and frozen embryonic stem (ES) cells, will be delivered to NIH-funded mouse repositories that supply mice to universities, medical schools and research labs all over the world. When researchers express interest in obtaining a certain knockout mouse line, the repositories will send them live mice, frozen embryos, sperm, and/or ES cells, so they can study the mice in their own labs. All data on the mice will be made available to researchers worldwide without restriction in publicly available databases on the Web. This resource will be available for a nominal fee which will be used to cover the cost of handling, shipping and replenishing the stock. Under the license agreements with Deltagen and Lexicon, researchers who receive the knockout mice lines through NIH are free to publish any results from research involving the line and also to seek patent or other intellectual property protection for any of the inventions or discoveries resulting from such research. List of Available Knockout Mice: http://www.informatics.jax.org/external/ko/ | knockout mouse, phenotype, mouse model, mutant, appearance, health, fitness, behavior, reproduction, human disease |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Mouse Genome Informatics (MGI) has parent organization: Mutant Mouse Resource and Research Center has parent organization: National Institutes of Health |
NIH Blueprint for Neuroscience Research | Public: For academic and non-profit researchers worldwide | nif-0000-00177 | SCR_007312 | NIH Deltagen and Lexicon Knockout Mice and Phenotypic Data Resource | 2026-09-03 04:49:03 | 0 | ||||||
|
fMRI Data Center Resource Report Resource Website 10+ mentions |
fMRI Data Center (RRID:SCR_007278) | fMRIDC | data or information resource, data repository, database, service resource, storage service resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented August 25, 2013 Public curated repository of peer reviewed fMRI studies and their underlying data. This Web-accessible database has data mining capabilities and the means to deliver requested data to the user (via Web, CD, or digital tape). Datasets available: 107 NOTE: The fMRIDC is down temporarily while it moves to a new home at UCLA. Check back again in late Jan 2013! The goal of the Center is to help speed the progress and the understanding of cognitive processes and the neural substrates that underlie them by: * Providing a publicly accessible repository of peer-reviewed fMRI studies. * Providing all data necessary to interpret, analyze, and replicate these fMRI studies. * Provide training for both the academic and professional communities. The Center will accept data from those researchers who are publishing fMRI imaging articles in peer-reviewed journals. The goal is to serve the entire fMRI community. | fmri, cognitive, cortex, mri, talairach, neuroimaging, cognitive neuroscience, brain, structure, function, magnetic resonance, intellect, image collection, data set |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is listed by: Biositemaps is listed by: re3data.org has parent organization: University of California at Santa Barbara; California; USA |
NSF ; W. M. Keck Foundation ; NIMH ; Sun Microsystems Center of Excellence |
PMID:11545705 | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-00025 | http://www.fmridc.org/ | SCR_007278 | The fMRI Data Center | 2026-09-03 04:49:13 | 16 | ||||
|
National Institute on Aging Genetics of Alzheimer’s Disease Data Storage Site (NIAGADS) Resource Report Resource Website 50+ mentions |
National Institute on Aging Genetics of Alzheimer’s Disease Data Storage Site (NIAGADS) (RRID:SCR_007314) | NIAGADS | data or information resource, data repository, data set, database, service resource, storage service resource | National genetics data repository facilitating access to genotypic and phenotypic data for Alzheimer's disease (AD). Data include GWAS, whole genome (WGS) and whole exome (WES), expression, RNA Seq, and CHIP Seq analyses. Data for the Alzheimer’s Disease Sequencing Project (ADSP) are available through a partnership with dbGaP (ADSP at dbGaP). Repository for many types of data generated from NIA supported grants and/or NIA funded biological samples. Data are deposited at NIAGADS or NIA-approved sites. Genetic Data and associated Phenotypic Data are available to qualified investigators in scientific community for secondary analysis. | genetics, alzheimer's disease, genome-wide association study, neurodegenerative disease, genotype, phenotype, late adult human, dna marker, dna sequencing, rna expression, rna, dna, gene |
is recommended by: National Library of Medicine is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: NIH Data Sharing Repositories is related to: Allen Institute for Brain Science has parent organization: University of Pennsylvania Perelman School of Medicine; Pennsylvania; USA |
Alzheimer's disease, Late-onset Alzheimer's disease, Aging | NIA 3U24AG041689; NIA U24 AG041689; NIH Blueprint for Neuroscience Research |
nif-0000-00179 | http://www.nitrc.org/projects/niagads http://alois.med.upenn.edu/niagads/ | SCR_007314 | National Institute on Aging, NIA Genetics of Alzheimer's Disease Data Storage Site, Genetics of Alzheimer’s Disease Data Storage Site | 2026-09-03 04:49:15 | 76 | |||||
|
GEB Resource Report Resource Website 1+ mentions |
GEB (RRID:SCR_007395) | GEB | software resource | A Java application developed to visualise distribution of genomic features in high resolution. | is listed by: OMICtools | OMICS_00911 | SCR_007395 | Genome Environment Browser | 2026-09-03 04:49:17 | 2 | |||||||||
|
Cambridge Structural Data Base Resource Report Resource Website 100+ mentions |
Cambridge Structural Data Base (RRID:SCR_007310) | CSD | data or information resource, database, software resource |
It records bibliographic, chemical and crystallographic information for organic molecules and metal-organic compounds whose 3D structures have been determined using X-ray diffraction and neutron diffraction. The CSD records results of single crystal studies and powder diffraction studies which yield 3D atomic coordinate data for at least all non-H atoms. In some cases the CCDC is unable to obtain coordinates, and incomplete entries are archived to the CSD. The CSD includes crystal structure data arising from: * publications in the open literature * Private Communications to the CSD (via direct data deposition) The Cambridge Structural Database System (CSDS) is a single product that comprises the following components: The Cambridge Structural Database (CSD); CSDS Software: search and information retrieval (ConQuest), structure visualization (Mercury), statistical analysis of retrieved data (VISTA), and software for database creation (PreQuest); Knowledge bases derived from the CSD: Mogul (intramolecular geometry) and IsoStar (intermolecular interactions, including data from the PDB). Cambridge Structural Database (CSD) is the world repository of small-molecule crystal structures. For example, the crystal structures supported by the National Institute on Drug Abuse are deposited here. |
3d structure, crystal, crystal studies, csd, metal-organic compounds, neutron diffraction, organic molecules, powder diffraction, x-ray diffraction |
is listed by: DataCite is listed by: re3data.org is listed by: FAIRsharing has parent organization: University of Cambridge; Cambridge; United Kingdom |
DOI:10.25504/FAIRsharing.vs7865, r3d100010197, nif-0000-00174, DOI:10.5517, DOI:10.25505, DOI:10.17616/R36011 | http://www.ccdc.cam.ac.uk/products/csd/, https://doi.org/10.17616/R30P93, https://doi.org/10.17616/r36011, https://doi.org/10.5517/, &&https://doi.org/10.25505/, , https://dx.doi.org/10.5517/, https://dx.doi.org/10.25505/, https://fairsharing.org/10.25504/FAIRsharing.vs7865, https://doi.org/10.17616/R36011 | SCR_007310 | Cambridge Structural Database | 2026-09-03 04:49:14 | 132 | |||||||
|
Ikaros Project Resource Report Resource Website 50+ mentions |
Ikaros Project (RRID:SCR_007391) | simulation software, software application, software resource | Ikaros is an open infrastructure for system level modeling of the brain including databases of experimental data, computational models and functional brain data. The system makes heavy use of the emerging standards for Internet based information and makes all information accessible through an open web-based interface. In addition, Ikaros can be used as a control architecture for robots which in the extension will lead to the development of a brain inspired robot architecture. The main components of the Ikaros systems are: a platform independent simulation kernel; a set of computational brain models; a set of I/O modules for interfacing with data files and peripheral such as robots or video cameras; tools for building systems of interconnected models; a plug-in architecture that allows new models to be easily added to the system; and a database with data from learning experiments that can be used for validation of the computational models. | model, computational neuroscience, brain, robot, simulation, FASEB list |
is listed by: 3DVC has parent organization: Lund University; Lund; Sweden |
nif-0000-00426 | SCR_007391 | Ikaros | 2026-09-03 04:49:11 | 89 | |||||||||
|
Biological General Repository for Interaction Datasets (BioGRID) Resource Report Resource Website 1000+ mentions |
Biological General Repository for Interaction Datasets (BioGRID) (RRID:SCR_007393) | BioGRID | data or information resource, database | Curated protein-protein and genetic interaction repository of raw protein and genetic interactions from major model organism species, with data compiled through comprehensive curation efforts. | budding yeast, fission yeast, protein, gene, protein interaction, genetic interaction, model organism, interaction, dataset, gene annotation, phenotype, orthologous interaction, yeast, cellular interaction network, physical interaction, protein-peptide, protein-rna, protein-protein interaction, genetics, publication, raw protein, genetic interaction, web service, pathway, network, biology, gene mapping, statistics, bio.tools, FASEB list |
is used by: NIF Data Federation is recommended by: National Library of Medicine is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is listed by: re3data.org is listed by: OMICtools is listed by: DataCite is listed by: NIH Data Sharing Repositories is listed by: bio.tools is listed by: Debian is related to: TissueNet - The Database of Human Tissue Protein-Protein Interactions is related to: Pathway Commons is related to: Cytoscape is related to: Interaction Reference Index is related to: ConsensusPathDB is related to: FlyMine is related to: IMEx - The International Molecular Exchange Consortium is related to: Integrated Molecular Interaction Database is related to: PSICQUIC Registry is related to: PSI-MI is related to: NIH Data Sharing Repositories is related to: Agile Protein Interactomes DataServer is related to: Integrated Manually Extracted Annotation has parent organization: Princeton University; New Jersey; USA has parent organization: University of Edinburgh; Scotland; United Kingdom has parent organization: University of Montreal; Quebec; Canada works with: IMEx - The International Molecular Exchange Consortium |
BBSRC ; Canadian Institutes of Health Research ; NCRR R01 RR024031; NHGRI HG02223; NIH Office of the Director R24 OD011194 |
PMID:23203989 PMID:21071413 PMID:16381927 PMID:12620108 |
Free, Freely available | nif-0000-00432, r3d100010350, OMICS_01901, biotools:the_grid | https://orip.nih.gov/comparative-medicine/programs/genetic-biological-and-information-resources, https://bio.tools/the_grid, https://doi.org/10.17616/R34C7G | SCR_007393 | , BioGRID, Biological General Repository for Interaction Datasets | 2026-09-03 04:49:34 | 2824 | ||||
|
MCell Resource Report Resource Website 50+ mentions |
MCell (RRID:SCR_007307) | simulation software, software application, software resource | Software modeling tool for realistic simulation of cellular signaling in complex 3-D subcellular microenvironment in and around living cells. Program that uses spatially realistic 3D cellular models and specialized Monte Carlo algorithms to simulate movements and reactions of molecules within and between cells. | Monte Carlo, simulator, cellular, microphysiology, living, cell, BRAIN Initiative |
is recommended by: BRAIN Initiative is related to: CellOrganizer |
NIGMS P41 GM103712 | Free, Available for download, Freely available | nif-0000-00160 | https://github.com/mcellteam/mcell | SCR_007307 | Monte Carlo simulator of cellular microphysiology | 2026-09-03 04:49:08 | 62 |
Can't find your Tool?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.
Welcome to the kravitz2 Resources search. From here you can search through a compilation of resources used by kravitz2 and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that kravitz2 has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on kravitz2 then you can log in from here to get additional features in kravitz2 such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
If you are logged into kravitz2 you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the facets that you can filter the data by.
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
Data set from Kravitz, Owen and Kretizer's 2012 paper "Optogenetic identification of striatal projection neuron subtypes during in vivo recordings."
