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| Resource Name | Proper Citation | Abbreviations | Resource Type |
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AGRICOLA Resource Report Resource Website 50+ mentions |
AGRICOLA (RRID:SCR_008158) | AGRICOLA, AGRICOLA NAL, AGRICOLA IND | database, data or information resource | A database, catalog and index to the collections of the National Agricultural Library, as well as a primary public source for world-wide access to agricultural information. This database resource covers materials in all formats and periods, including printed works from as far back as the 15th century. AGRICOLA is a bibliographic database of citations to the agricultural literature created by the National Agricultural Library and its cooperators. The records describe publications and resources encompassing all aspects of agriculture and allied disciplines, including animal and veterinary sciences, entomology, plant sciences, forestry, aquaculture and fisheries, farming and farming systems, agricultural economics, extension and education, food and human nutrition, and earth and environmental sciences. Although the NAL Catalog (AGRICOLA) does not contain the text of the materials it cites, thousands of its records are linked to full-text documents online, with new links added daily. The NAL Catalog (AGRICOLA) is organized into two bibliographic data sets: *The NAL Online Public Access Catalog (AGRICOLA NAL) contains citations to books, audiovisuals, serials, and other materials, most of which are in the Library''s collection. (The Catalog does contain some records for items not held at NAL.) *The Article Citation Database (AGRICOLA IND) includes citations, many with abstracts, to journal articles (see Journals Indexed in AGRICOLA), book chapters, reports, and reprints, selected primarily from the materials found in the NAL Catalog. | earth, economic, education, entomology, environmental, extension, farming, fishery, food, forestry, agricultural, agriculture, animal, aquaculture, human, nutrition, plant, science, system farm, veterinary, book, serial, audiovisual, FASEB list | is related to: Europe PubMed Central | nif-0000-21011 | SCR_008158 | National Agricultural Library Catalog AGRICultural OnLine Access, AGRICultural OnLine Access, AGRICOLA: AGRICultural OnLine Access, NAL Catalog (AGRICOLA), National Agricultural Library Catalog (AGRICOLA), NAL Catalog AGRICultural OnLine Access, AGRICOLA NAL, AGRICOLA IND | 2026-08-06 09:27:07 | 52 | ||||||||
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Caenorhabditis Genome Sequencing Projects Resource Report Resource Website |
Caenorhabditis Genome Sequencing Projects (RRID:SCR_008155) | database, data or information resource | The Sanger Institute and the Genome Sequencing Center at the Washington University School of Medicine, St. Louis have collaborated to sequence the genomes of both C. elegans and C. briggsae. The completed C. elegans genome sequence is represented by over 3,000 individual clone sequences which can be accessed through this site (or through WormBase). These sequences are submitted to EMBL whenever the sequence or annotation changes (e.g. modification to gene structures) and these submissions are then mirrored to GenBank and DDBJ. These sequences (along with ESTs and proteins) can be searched on our C. elegans BLAST server. WormBase is the repository of mapping, sequencing and phenotypic information for C. elegans. The worm informatics group at the Sanger Institute play a key role in assembling the whole database. They also curate and develop some of the constituent databases that comprise WormBase. | elegans, briggsae, caenorhabditis, clone, genome, mapping, phenotypic, sequence | has parent organization: Wellcome Trust Sanger Institute; Hinxton; United Kingdom | nif-0000-21001 | SCR_008155 | CGSP | 2026-08-06 09:27:05 | 0 | |||||||||
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Alternative Exon Database Resource Report Resource Website |
Alternative Exon Database (RRID:SCR_008157) | AEdb | database, data or information resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented on March 27, 2013. A manual generated database for alternative exons and their properties from numerous species - the data is gathered from literature where these exons have been experimentally verified. Most alternative exons are cassette exons and are expressed in more than two tissues. Of all exons whose expression was reported to be specific for a certain tissue, the majority were expressed in the brain. At the moment, AEdb products that are available are sequence (a database of alternative exons), function (a database of functions attributed to constitutive and alternative exon), regulatory sequence (a database of transcript regulatory motifs), minigenes (a table of minigenes and their associations to splicing events), and diseases (a table of diseases associated with splicing and their associations to AltSplice). Alternative splicing is an important regulatory mechanism of mammalian gene expression. The alternative splicing database (ASD) consortium is systematically collecting and annotating data on alternative splicing. The continuation and upgrade of the ASD consists of computationally and manually generated data. Its largest parts are AltSplice, a value-added database of computationally delineated alternative splicing events. Its data include alternatively spliced introns/exons, events, isoform splicing patterns and isoform peptide sequences. AltSplice data are generated by examining gene-transcript alignments. The data are annotated for various biological features including splicing signals, expression states, (SNP)-mediated splicing and cross-species conservation. AEdb forms the manually curated component of ASD. It is a literature-based data set containing sequence and properties of alternatively spliced exons, functional enumeration of observed splicing events, characterization of observed splicing regulatory elements, and a collection of experimentally clarified minigene constructs. | element, exon, expression, gene, alignment, alternative, brain, conservation, cross-specie, disease, isoform, mechanism, minigene, pattern, peptide, regulatory, sequence, signal, splice, splicing, structure intron, tissue, transcript, nucleotide sequence, gene structure, intron, splice site, alternative splicing, sequence, alternative exon, function, constitutive exon, alternative exon, regulatory sequence, transcript regulatory motif, minigene, disease | has parent organization: European Bioinformatics Institute | PMID:16381912 | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-21009 | SCR_008157 | 2026-08-06 09:27:06 | 0 | |||||||
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Database of oligomerization domains from lambda experiments Resource Report Resource Website |
Database of oligomerization domains from lambda experiments (RRID:SCR_008107) | database, data or information resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented on July 15, 2013. Doodle is a database that was developed to store and distribute information about the protein oligomerization domains that are encoded by various genomes. The protein oligomerization domains described here were found using the lambda repressor fusion system. Doodle uses a schema that is based on EnsEMBL, while also utilizing bioperl modules to both store and retrieve data. The frontend was developed entirely in perl, while the backend utilizes MySQL. GMOD was used to develop the genomic view. | genome, oligomerization, protein | has parent organization: Texas A and M University; Texas; USA | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-20834 | SCR_008107 | Doodle | 2026-08-06 09:27:06 | 0 | ||||||||
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Plasmid Genome Database Resource Report Resource Website 10+ mentions |
Plasmid Genome Database (RRID:SCR_008228) | database, data or information resource | The Plasmid Genome Database aims to collate biological and genomic data for all bacterial plasmids in the hopes of enabling rapid, interrogation of both meta- and genomic data. Data maintained includes access to all plasmid genomes and information on core genomic features obtained from parsing the original EMBL/DDBJ/NCBI submission. In addition a suite of third party analyses has been performed for each genome to supplement the original annotation. This site also links to Genome Atlases provided by the Centre for Biological Sequence Analysis (CBS). The motivation behind the construction of this site derived from observations from genome sequencing projects: the abundance and inferred importance of the horizontal gene pool (HGP) in bacterial adaptation and evolution. In so far as plasmids are autonomously replicating, extrachromosomal elements they are a readily identifiable and accessible component of the HGP. Also plasmids have been identified in almost all bacterial divisions, ranging in size from less than 2 kbp to > 1.5 Mbp and as such represent a defined, yet diverse and complex sample of genes in the HGP. | element, evolution, extrachromosomal, gene, adaptation, atlas, autonomous, bacterial, biological, division, genome, genomic, hgp, plasmid, pool, prokaryote databases, replicate | nif-0000-21323 | http://www.genomics.ceh.ac.uk/plasmiddb/ | SCR_008228 | PGD | 2026-08-06 09:27:07 | 21 | |||||||||
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NEI (neuro-endocrine-immune) Network Database Resource Report Resource Website |
NEI (neuro-endocrine-immune) Network Database (RRID:SCR_008106) | database, data or information resource | Version 1.0 database for neuro-endocrine-immune (dbNEI) is a web-based knowledge resource specific for the NEI systems. It provides a knowledge environment for understanding the main regulatory systems of NEI in a molecular level. dbNEI provides a knowledge environment for understanding the main regulatory systems of NEI in a molecular level. dbNEI collects 1,058 NEI related signal molecules, their 940 interactions and 72 affiliated tissues from the Cell Signaling Networks database and manually selects 982 NEI papers from PubMed. NEI related information, such as signal transductions, regulations and control subunits, are integrated. Especially, dbNEI represents as graphic visualization, by which control subunits can be automatically obtained according to the inquiring issues. Version 2.0: We updated the database in four aspects. 1. Recruiting new NEI genes and compounds. 2. Adding KEGG,HPRD,Transcription factor and microRNA target relations. 3. Collecting drug-gene and disease-gene relation. 4. Building multi-layer network for drug-NEI-disease. | immunology, neuroimmunology, neuro-immunology | has parent organization: Tsinghua University; Beijing; China | PMID:18658181 PMID:16648803 |
nif-0000-12493 | SCR_008106 | Neuro-endocrine-immmune Database, dbNEI | 2026-08-06 09:27:06 | 0 | ||||||||
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GeneSeeker Resource Report Resource Website 1+ mentions |
GeneSeeker (RRID:SCR_008347) | database, data or information resource | The GeneSeeker allows you to search across different databases simultaneously, given a known human genetic location and expression/phenotypic pattern. The GeneSeeker returns any found gene names which are located on the specified location and expressed in the specified tissue. To search for more expression location in one search, just enter them in the textbox for the expression location and separate them with logical operators (and, or, not). You can specify as many tissues as you want, the program starts 20 queries simultaneously, and then waits for a query to finish before starting another query, to keep server loads to a minimum. You can also search only for expression, just leave the cytogenetic location fields blank, and do the query. If you only want to look for one cytogenetic location, only fill in the first location field, and the GeneSeeker will search with only this one. Housekeeping genes , found in Swissprot can be excluded, or genes that are to be excluded can be specified. Human chromosome localizations are translated with an oxford-grid to mouse chromosome localizations, and then submitted to the Mgd. Sponsors: GeneSeeker is a service provided by the Centre for Molecular and Biomolecular Informatics (CMBI). | expression, federated database, gene, genetic, biomolecular, chromosome, cytogenetic, database, human, localization, location, molecular, pattern, phenotypic, tissue, bio.tools |
is listed by: bio.tools is listed by: Debian has parent organization: Radboud University; Nijmegen; The Netherlands |
biotools:geneseeker, nif-0000-25211 | https://bio.tools/geneseeker | SCR_008347 | GeneSeeker | 2026-08-06 09:27:11 | 5 | ||||||||
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Database of Domain Interactions and Bindings Resource Report Resource Website |
Database of Domain Interactions and Bindings (RRID:SCR_008100) | database, data or information resource | DDIB collects information of domain-domain interactions and domain interactions with biological molecules such as RNA, DNA, peptides, inorganic ions, phospholipids and cholesterols. Most of the data were extracted automatically from publication abstracts in MEDLINE, and the rest were collected from other public databases, research laboratories and individual scientists. In addition, DDIB includes many putative domain-domain interactions inferred from documented protein-protein interactions. To provide comprehensive knowledge of a domain, DDIB also integrates relevant information from PFAM, InterPro, GO and KEGG databases. | cholesterol, dna, domain-domain interaction, inorganic ion, molecule, peptide, phospholipid, rna | has parent organization: Chinese Academy of Sciences; Beijing; China | nif-0000-20833 | SCR_008100 | DDIB | 2026-08-06 09:27:06 | 0 | |||||||||
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Protochlamydia amoebophila UWE25 Resource Report Resource Website |
Protochlamydia amoebophila UWE25 (RRID:SCR_008222) | database, data or information resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented on July 15, 2013. This is the official database of the environmental chlamydia genome project. This resource provides access to finished sequence for Parachlamydia-related symbiont UWE25 and to a wide range of manual annotations, automatical analyses and derived datasets. Functional classification and description has been manually annotated according to the Annotation guidelines. Chlamydiae are the major cause of preventable blindness and sexually transmitted disease. Genome analysis of a chlamydia-related symbiont of free-living amoebae revealed that it is twice as large as any of the pathogenic chlamydiae and had few signs of recent lateral gene acquisition. We showed that about 700 million years ago the last common ancestor of pathogenic and symbiotic chlamydiae was already adapted to intracellular survival in early eukaryotes and contained many virulence factors found in modern pathogenic chlamydiae, including a type III secretion system. Ancient chlamydiae appear to be the originators of mechanisms for the exploitation of eukaryotic cells. Environmental chlamydiae have recently been recognized as obligate endosymbionts of free-living amoebae and have been implicated as potential human pathogens. Environmental chlamydiae form a deep branching evolutionary lineage within the medically important order Chlamydiales. Despite their high diversity and ubiquitous distribution in clinical and environmental samples only limited information about genetics and ecology of these microorganisms is available. The Parachlamydia-related Acanthamoeba symbiont UWE25 was therefore selected as representative environmental chlamydia strain for whole genome sequencing. Comparative genome analysis was performed using PEDANT and simap. Sponsors: The environmental chlamydia genome project was funded by the bmb+f (German Federal Ministry of Education and Research) and is part of the Competence Network PathoGenoMiK. | ecology, endosymbiont, environmental, eukaryote, eukaryotic, evolutionary, functional, gene, genetic, acanthamoeba, amoebae, blindness, cell, chlamydia, classification, clinical, genome, human, intracellular, lateral, lineage, mechanism, microorganism, obligate, parachlamydia, pathogen, pathogenic, sequence, sexually, strain, survival, symbiont, transmitted disease, uwe25, virulence | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-21310 | SCR_008222 | Protochlamydia amoebophila UWE25 | 2026-08-06 09:27:07 | 0 | |||||||||
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Extended Alternatively Spliced EST Database Resource Report Resource Website |
Extended Alternatively Spliced EST Database (RRID:SCR_008186) | EASED | database, data or information resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented on July 15, 2013. An online available compendium of alternative splice forms for several organisms (Arabidopsis thaliana, Bos taurus, Caenorhabditis elegans, Drosophila melanogaster, Danio rerio, Homo sapiens, Mus musculus, Rattus norvegicus, Xenopus laevis). Alternative splice forms are defined by comparing high-scoring ESTs to mRNA sequences (both from GenBank) with known exon-intron information (from ENSEMBL database) using BLAST. Repetitive sequences of all mRNAs have beforehand been masked by MaskerAid. Filtering programs with defined parameters compare the ends of each aligned sequence pair for deletions or insertions in the EST sequence, which suggest the existence of alternative splice forms. The database is accessible by typing in accession numbers (ACC) or keywords like description, gene names, organism or other keywords. (If more than one hit was found a list of all results is given.) And the result page is divided into 4 major parts. The first part (General Information About The Entry) summarizes the most important information as database ids, organism, and description. The so called alternative splice profile (ASP) of each human sequence is shown in the second part (Alternative Splice Frequency). The ASP indicates the number of alternatively spliced ESTs (NAE), the number of constitutively spliced ESTs (NCE) as well as the number of alternative splice sites (NSS) per mRNA. NAE and NCE corresponds to the EST coverage and can be used as a quality value for the predicted alternative splice variants. The NSS value specifies the splice propensity of a gene. Moreover the number of ESTs from cancerous tissues is shown. The histological source and the developmental stages are illustrated with several colors to enables the user to get an overview of the origins of the matching ESTs. Also, the Splice Site View shows graphically all alternative splice sites for the whole transcript. | drosophila melanogaster, est, exon, filtering, form, gene structure, aligned, alternative, arabidopsis thaliana, bos taurus, caenorhabditis elegans, cancerous, color, danio rerio, deletion, developmental, histological, homo sapien, insertion, intron, mrna, mus musculus, nucleotide sequence, organism, pair, rattus norvegicus, sequence, splice, splice sites databases, stage, tissue, xenopus laevis | has parent organization: Max Delbruck Center for Molecular Medicine; Berlin; Germany | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-21138 | SCR_008186 | Extended Alternatively Spliced EST Database | 2026-08-06 09:27:05 | 0 | |||||||
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Comprehensive Systems-Biology Database Resource Report Resource Website 10+ mentions |
Comprehensive Systems-Biology Database (RRID:SCR_008185) | database, data or information resource | CSB.DB presents the results of bio-statistical analysis on gene expression data in association with additional biochemical and physiological knowledge. The main aim of this database platform is to provide tools that support insight into life''s complexity pyramid with a special focus on the integration of data from transcript and metabolite profiling experiments. The main focus of the CSB project is the generation of new easily accessible knowledge about the relationship and the hierarchy of cellular components. Thus new progress towards understanding lifes complexity pyramid is made. For this aim statistical and computational algorithms are applied to organism specific data derived from publicly available multi-parallel technologies, currently such as expression profiles. The underlying data are derived from various research activities. Thus CSB project provides an integrated and centralized public resource allowing universal access on the generated knowledge CSB.DB: A Comprehensive Systems-Biology Database. The derived knowledge should support the formulation of new hypotheses about the respective functional involvement of genes beyond their (inter-) relationships. Another major goal of the CSB project is to supply the researchers with necessary information to formulate these new hypotheses without demanding any a-priori statistical knowledge of the user. The CSB project mainly focuses on application of required statistical tests as well as to assist the user during exploration of results with information / help files to support hypothesis generation | expression, gene, generation, algorithm, arabidopsis thaliana databases, biochemical, biology, bio-statistical, cellular, compound, computational, hierarchy, metabolite, organism, physiological, plant, system, transcript |
is listed by: 3DVC has parent organization: Max Planck Institute of Molecular Plant Physiology; Golm; Germany |
nif-0000-21102 | SCR_008185 | CSB.DB | 2026-08-06 09:27:08 | 11 | |||||||||
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Computer-Assisted Information Retrieval Service System for Music Resource Report Resource Website |
Computer-Assisted Information Retrieval Service System for Music (RRID:SCR_008177) | database, data or information resource | CAIRSS is a bibliographic database of older literature (prior to 1993) of music research literature in music education, music psychology, music therapy, and music medicine. Citations have been taken from 1,354 different journal titles; 18 of which are primary journals, meaning that every article ever to appear is included. The primary journals are: * Arts in Psychotherapy * Bulletin of the Council for Research in Music Education * Bulletin of the National Association for Music Therapy * Contributions to Music Education * Hospital Music Newsletter * International Journal of Arts Medicine * Journal of the Association for Music and Imagery * Journal of Music Teacher Education * Journal of Music Therapy * Journal of Research in Music Education * Medical Problems of Performing Artists * Music Perception * Music Therapy * Music Therapy Perspectives * Psychology of Music * Psychomusicology * The Quarterly * Applications of Research to Music Education | article, literature, music, music education, music medicine, music psychology, music therapy, psychomusicology, psychotherapy, scientific literature databases and services, journal | has parent organization: University of Texas at San Antonio; Texas; USA | nif-0000-21074 | SCR_008177 | CAIRSS for Music; CAIRSS | 2026-08-06 09:27:06 | 0 | |||||||||
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Mammalian Phosphorylation Resource Resource Report Resource Website |
Mammalian Phosphorylation Resource (RRID:SCR_008210) | MPR | database, data or information resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented on 6/24/13. A repository of information on commercially available phospho-specific antibodies to human phosphorylation sites. It provides a BLAST search for phosphorylation sites using as query the amino acid sequence surrounding the site. It also provides direct links to the relevant antibodies from many companies including BD Pharmingen, Biosource International, Cell Signaling Technology (CST), Santa Cruz Biotechnologies, Upstate Biotechnology. | amino acid, antibody, human, mammalian, phosphorylation, protein property databases, repository, sequence, blast, data analysis resource |
is listed by: 3DVC has parent organization: Center for Cancer Research |
THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-21274 | SCR_008210 | Mammalian Phosphorylation Resource | 2026-08-06 09:27:07 | 0 | |||||||
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CDKN2A Database Resource Report Resource Website |
CDKN2A Database (RRID:SCR_008179) | database, data or information resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented August 23, 2016. The CDKN2A Database presents the germline and somatic variants of the CDKN2A tumor suppressor gene recorded in human disease through June 2003, annotated with evolutionary, structural, and functional information, in a format that allows the user to either download it or manipulate it for their purposes online. The goal is to provide a database that can be used as a resource by researchers and geneticists and that aids in the interpretation of CDKN2A missense variants. Most online mutation databases present flat files that cannot be manipulated, are often incomplete, and have varying degrees of annotation that may or may not help to interpret the data. They hope to use CDKN2A as a prototype for integrating computational and laboratory data to help interpret variants in other cancer-related genes and other single nucleotide polymorphisms (SNPs) found throughout the genome. Another goal of the lab is to interpret the functional and disease significance of missense variants in cancer susceptibility genes. Eventually, these results will be relevant to the interpretation of single nucleotide polymorphisms (SNPs) in general. The CDKN2A locus is a valuable model for assessing relationships among variation, structure, function, and disease because: Variants of this gene are associated with hereditary cancer: Familial Melanoma (and related syndromes); somatic alterations play a role in carcinogenesis; allelic variants occur whose functional consequences are unknown; reliable functional assays exist; and crystal structure is known. All variants in the database are recorded according to the nomenclature guidelines as outlined by the Human Genome Variation Society. This database is currently designed for research purposes only and is not yet recommended as a clinical resource. Many of the mutations reported here have not been tested for disease association and may represent normal, non-disease causing polymorphisms. | evolutionary, familial, function, functional, gene, gene-, genetic, allele, allelic, alteration, cancer, carcinogenesis, cdkn2a, crystal, disease, genome, germline, hereditary, human, locus, melanoma, missense, model, mutation, nucleotide, or disease- specific databases, polymorphism, single, snp, somatic, structural, structure, suppressor, syndrome, system-, tumor, variant, variation | has parent organization: University of Vermont; Vermont; USA | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-21079 | SCR_008179 | CDKN2A Database | 2026-08-06 09:27:05 | 0 | ||||||||
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Nh3D: A Reference Dataset of Structures of Non-homologous Proteins Resource Report Resource Website |
Nh3D: A Reference Dataset of Structures of Non-homologous Proteins (RRID:SCR_008212) | Nh3D | database, data or information resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented on July 17, 2013. It is freely available as a reference dataset for the statistical analysis of sequence and structure features of proteins in the PDB. It is a dataset of structurally dissimilar proteins. This dataset has been compiled by selecting well resolved representatives from the Topology level of the CATH database which hierarchically classifies all protein structures. These have been been pruned to remove: i) domains that may contain homologous elements (by pairwise sequence comparison and structural superposition of aligned residues) ii) internal duplications (by repeat detection) iii) regions with high B-Factor The statistical analysis of protein structures requires datasets in which structural features can be considered independently distributed, i.e. not related through common ancestry, and that fulfill minimal requirements regarding the experimental quality of the structures it contains. However, non-redundant datasets based on sequence similarity invariably contain distantly related homologues. Here a reference dataset of non-homologous protein domains is provided, assuming that structural dissimilarity at the topology level is incompatible with recognizable common ancestry. It contains the best refined representatives of each Topology level, validates structural dissimilarity and removes internally duplicated fragments. The compilation of Nh3D is fully scripted. The current Nh3D list contains 570 domains with a total of 90780 residues. It covers more than 70% of folds at the Topology level of the CATH database and represents more than 90% of the structures in the PDB that have been classified by CATH. Even though all protein pairs are structurally dissimilar, some pairwise sequence identities after global alignment are greater than 30%. Nh3D is freely available as a reference dataset for the statistical analysis of sequence and structure features of proteins in the PDB. | duplication, element, feature, fragment, align, alignment, analysis, b-factor, dissimilar, homologous, protein, protein structure databases, residue, sequence, statistical, structurally, structure, topology | has parent organization: University of Toronto; Ontario; Canada | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-21286 | SCR_008212 | 2026-08-06 09:27:06 | 0 | ||||||||
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National Cancer Institute 3D Structure Database Resource Report Resource Website |
National Cancer Institute 3D Structure Database (RRID:SCR_008211) | database, data or information resource | The NCI DIS 3D database is a collection of 3D structures for over 400,000 drugs. The database is an extension of the NCI Drug Information System. The structural information stored in the DIS is only the connection table for each drug. The connection table is just a list of which atoms are connected and how they are connected. It is essentially a searcheable database of three-dimensional structures has been developed from the chemistry database of the NCI Drug Information System (DIS), a file of about 450,000 primarily organic compounds which have been tested by NCI for anticancer activity. The DIS database is very similar in size and content to the proprietary databases used in the pharmaceutical industry; its development began in the 1950s; and this history led to a number of problems in the generation of 3D structures. This information can be searched to find drugs that share similar patterns of connections, which can correlate with similar biological activity. But the cellular targets for drug action, as well as the drugs themselves, are 3 dimensional objects and advances in computer hardware and software have reached the point where they can be represented as such. In many cases the important points of interaction between a drug and its target can be represented by a 3D arrangement of a small number of atoms. Such a group of atoms is called a pharmacophore. The pharmacophore can be used to search 3D databases and drugs that match the pharmacophore could have similar biological activity, but have very different patterns of atomic connections. Having a diverse set of lead compounds increases the chances of finding an active compound with acceptable properties for clinical development. Sponsor: The ICBG are supported by the Cooperative Agreement mechanism, with funds from nine components of the NIH, the National Science Foundation, and the Foreign Agricultural Service of the USDA. | drug, 3d, 3d molecular structures, anticancer, atom, atomic, biological, cellular, chemistry, clinical, compound, development, interaction, lead, organic, pattern, pharmaceutical, pharmacophore, structural, structure |
has parent organization: National Cancer Institute has parent organization: National Cancer Institute |
nif-0000-21279 | SCR_008211 | NCI DIS 3D Database | 2026-08-06 09:27:08 | 0 | |||||||||
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Bioethics Institutes Database Resource Report Resource Website |
Bioethics Institutes Database (RRID:SCR_008173) | database, data or information resource | Bioethics database comprises over 645 bioethics institutions (bioethics committees, commissions, training, research and documentation centres) in over 80 countries, including information on activities and publications. Information is based on replies obtained from a widely distributed questionnaire and has been gathered in cooperation with National Commissions and Permanent Delegations to UNESCO. The Program develops four main action areas: -Intellectual forum -Standard-setting action -Advisory role and capacity-building -Education and awareness raising The Bioethics Program is part of UNESCOs Division of the Ethics of Science and Technology in the Social and Human Sciences Sector. It is primarily responsible for the Secretariat of two advisory bodies: the International Bioethics Committee (IBC), composed of 36 independent experts, and the Intergovernmental Bioethics Committee (IGBC), composed of representatives of 36 Member States. These Committees cooperate to produce advice, recommendations and proposals that each submits to the Director-General for consideration by UNESCOs governing bodies. | education, forum, activity, awareness, bioethics, commission, intellectual, publication, research, scientific literature databases and services, technology, training | nif-0000-21054 | SCR_008173 | Bioethics Database | 2026-08-06 09:27:06 | 0 | ||||||||||
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Open Library Resource Report Resource Website |
Open Library (RRID:SCR_008295) | database, data or information resource | Open Library is a project of the non-profit Internet Archive, and is funded in part by a grant from the California State Library. They have a small team of fantastic programmers who have accomplished a lot, but we can''t do it alone! This is an Open project - the software is open, the data is open, the documentation is open, and the site is open. To build it, they need hundreds of millions of book records, a brand new database infrastructure for handling huge amounts of dynamic information, a wiki interface, multi-language support, and people who are willing to contribute their time, effort, and book data. To date, they have gathered about 30 million records (20 million are available through the site now), and more are on the way. They have built the database infrastructure and the wiki interface, and you can search millions of book records, narrow results by facet, and search across the full text of 1 million scanned books. Sponsors: Open Library is funded by a grant from the California State Library. | archive, library, record, book | nif-0000-24594 | SCR_008295 | Open Library | 2026-08-06 09:27:07 | 0 | ||||||||||
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Biological Information Browsing Environment Resource Report Resource Website |
Biological Information Browsing Environment (RRID:SCR_008170) | BIBE | database, data or information resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented on July 15, 2013. A facility to help novices and experts find information about plants and animals in digital collections. The objectives of the Project are to facilitate access to online flora and fauna by both novices and experts through enhanced indexing, searching, and visualization techniques. Specific search facility and content will be added to help users with different levels of domain knowledge identify species based on the augmentation of professionally developed taxonomic treatments or species descriptions. This is a novel use of taxonomic descriptions. | fauna, flora, animal, biological, description, identification, plant, specie, taxonomic, taxonomy, treatment | has parent organization: University of Illinois at Urbana-Champaign; Illinois; USA | Division of Biological Infrastructure ; Biological Databases and Informatics Program ; Program Director Sylvia Spengler Project ID:DBI-9982849 ; University of Illinois ; Campus Research Board ; NSF |
THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-21046 | SCR_008170 | Biological Information Browsing Environment | 2026-08-06 09:27:06 | 0 | ||||||
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AmaZonia: Explore the Jungle of Microarrays Results Resource Report Resource Website 1+ mentions |
AmaZonia: Explore the Jungle of Microarrays Results (RRID:SCR_008405) | database, data or information resource | A web interface and associated tools for easy query of public human transcriptome data by keyword, through thematic pages with list annotations. Amazonia provides a thematic entry to public transcriptomes: users may for instance query a gene on a Stem Cells page, where they will see the expression of their favorite gene across selected microarray experiments related to stem cell biology. This selection of samples can be customized at will among the 6331 samples currently present in the database. Every transcriptome study results in the identification of lists of genes relevant to a given biological condition. In order to include this valuable information in any new query in the Amazonia database, they indicate for each gene in which lists it is included. This is a straightforward and efficient way to synthesize hundreds of microarray publications., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | molecular neuroanatomy, microarray, transcriptome, human, data, stem cell, gene expression | Association Franaise contre les Myopathies ; Canceropole Grand Sud-Ouest |
THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-30089 | SCR_008405 | AmaZonia | 2026-08-06 09:27:08 | 9 |
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Data set from Kravitz, Owen and Kretizer's 2012 paper "Optogenetic identification of striatal projection neuron subtypes during in vivo recordings."
