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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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bulkGAN Resource Report Resource Website |
bulkGAN (RRID:SCR_024798) | software application, software resource | Software tool for scRNA and spatial transcriptomics.Used to generate RNA data close to real bulk RNA-seq with constraints of scRNA-seq data, based on keras and tensflow framework. | GANs, bulk RNA-seq, scRNA-seq, spatial transcriptomics, | Free, Available for download, Freely available | https://codeocean.com/capsule/8144402/tree | SCR_024798 | 2026-08-04 09:45:36 | 0 | ||||||||||
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Adobe Fresco Resource Report Resource Website 1+ mentions |
Adobe Fresco (RRID:SCR_024887) | software application, software resource | Software digital painting and drawing application. Used to create figures. Built for the latest stylus and touch devices, now including iPhones. Collection of vector and raster brushes, live brushes, to deliver natural painting and drawing experience.Vector and raster graphics editor developed by Adobe primarily for digital painting. Originally designed for the Apple iPad with Pencil support. | Adobe, collection of vector and raster brushes, live brushes, digital painting and drawing, | Restricted | SCR_024887 | 2026-08-04 09:45:37 | 1 | |||||||||||
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FMRIB's Automated Segmentation Tool Resource Report Resource Website 1+ mentions |
FMRIB's Automated Segmentation Tool (RRID:SCR_024920) | FAST | software application, software resource | Software tool to segment 3D image of brain into different tissue types like Grey Matter, White Matter, CSF, etc., whilst also correcting for spatial intensity variations also known as bias field or RF inhomogeneities. Used to perform tissue type segmentation and bias field correction. | Functional Magnetic Resonance Imaging of the Brain, segment 3D image of brain, segment 3D image, brain image, different tissue types, spatial intensity variations corrections, bias field, RF inhomogeneities, | is a plug in for: FSL | Free, Freely available | SCR_024920 | FAST:FMRIB's Automated Segmentation Tool, Functional Magnetic Resonance Imaging of the Brain's Automated Segmentation Tool | 2026-08-04 09:45:40 | 7 | ||||||||
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SGAE Resource Report Resource Website 1+ mentions |
SGAE (RRID:SCR_024803) | software application, software resource | Software graph neural network based tool for spatial domain deciphering. Used for deciphering spatial domains from spatially resolved transcriptomics. | graph neural network, spatial domain deciphering, spatially resolved transcriptomics, | Free, Available for download, Freely available | SCR_024803 | Siamese Graph Autoencoder | 2026-08-04 09:45:38 | 1 | ||||||||||
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Qt Creator Resource Report Resource Website 1+ mentions |
Qt Creator (RRID:SCR_024883) | software application, software resource | Cross-platform, complete Integrated Development Environment for application developers to create applications for multiple desktop, embedded, and mobile device platforms, such as Android and iOS. It is available for Linux, macOS and Windows operating systems. In addition, you can use the experimental WebAssembly plugin to build applications in web format and run them in web browsers. | Qt Group, integrated development environment, cross-platform Qt IDE, cross-platform Qt Integrated Development Environment, application developers, create applications, | Restricted | https://www.qt.io/?search=Qt+Creator | SCR_024883 | 2026-08-04 09:45:37 | 1 | ||||||||||
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3DHISTECH SlideViewer Resource Report Resource Website 10+ mentions |
3DHISTECH SlideViewer (RRID:SCR_024885) | software application, software resource | Software tool for working with whole slide images. Digital microscope application for supporting histopathological diagnostic workflow and microscope examination process. Advanced slide viewing software used in clinical pathology and research. | 3DHISTECH Ltd, Digital microscope application, working with whole slide images, supporting histopathological diagnostic workflow, supporting microscope examination process, | Free, Available for download, Freely available | SCR_024885 | SlideViewer | 2026-08-04 09:45:39 | 13 | ||||||||||
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Multivariate Exploratory Linear Optimized Decomposition into Independent Components Resource Report Resource Website 10+ mentions |
Multivariate Exploratory Linear Optimized Decomposition into Independent Components (RRID:SCR_024916) | MELODIC | software application, software resource | Software tool to use at both the subject and group level to decompose FMRI data into time courses and spatial maps using Independent Component Analysis. Used to decompose single or multiple 4D data sets into different spatial and temporal components. | Independent Component Analysis, decompose FMRI data, decompose single or multiple 4D data sets, spatial and temporal components, | is a plug in for: FSL | Free, Freely available | SCR_024916 | MELODIC:Multivariate Exploratory Linear Optimized Decomposition into Independent Components | 2026-08-04 09:45:38 | 24 | ||||||||
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FABBER Resource Report Resource Website |
FABBER (RRID:SCR_024917) | software application, software resource | Software command-line tool for approximate Bayesian inference using generative signal models. | command-line tool, approximate Bayesian inference, generative signal models, | is a plug in for: FSL | Free, Freely available, | SCR_024917 | 2026-08-04 09:45:40 | 0 | ||||||||||
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VERBENA Resource Report Resource Website |
VERBENA (RRID:SCR_024919) | software application, software resource | Software tool for quantification of perfusion and other haemodynamic parameters from Dynamic Susceptibility Contrast perfusion MRI of the brain. | Dynamic Susceptibility Contrast, quantification of perfusion, haemodynamic parameters, Dynamic Susceptibility Contrast perfusion MRI, brain | is a plug in for: FSL | Free, Freely available | SCR_024919 | VERBENA:Vascular Model Based Perfusion Quantification for DSC-MRI | 2026-08-04 09:45:38 | 0 | |||||||||
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PS:Power and Sample Size Calculation Resource Report Resource Website 1+ mentions |
PS:Power and Sample Size Calculation (RRID:SCR_024912) | PS | software application, software resource | Software application as interactive program for performing power and sample size calculations. Can determine the sample size needed to detect specified alternative hypothesis with required power, the power with which specific alternative hypothesis can be detected with given sample size, or the specific alternative hypotheses that can be detected with given power and sample size. | interactive program for performing power and sample size calculations, power and sample size calculations, | PMID:9875838 | Free, Available for download, Freely available | SCR_024912 | 2026-08-04 09:45:38 | 7 | |||||||||
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GE: Healthcare: Lunar Prodigy Advance system Resource Report Resource Website |
GE: Healthcare: Lunar Prodigy Advance system (RRID:SCR_025004) | instrument resource, software resource | System offers dual energy X-ray absorptiometry assessment. Bone densitometry scan with enCORE v18 software platform. Meets International Society for Clinical Densitometry testing guidelines. Used to take measurements to work out the strength of bones in advanced bone and metabolic health clinical applications. | GE Lunar Prodigy Advance, GE Healthcare, DXA, dual energy X-ray absorptiometry, bone densitometry, bone densitometry scan, ENCORE 18, | Restricted | https://www.gehealthcare.com/products/bone-and-metabolic-health/encore-software-platform, https://www.gehealthcare.com/-/jssmedia/feature/gehc/products/lunar-idxa/encore_v18_brochure_global_jb70808xx.pdf?rev=-1 | SCR_025004 | , GE Healthcare Lunar Prodigy Advance version ENCORE 18, GE Lunar Prodigy Advance | 2026-08-04 09:45:42 | 0 | |||||||||
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BayCEST Resource Report Resource Website |
BayCEST (RRID:SCR_024951) | software application, software resource | Software tool for Bayesian analysis for chemical exchange saturation transfer z-spectra. | Bayesian analysis, chemical exchange saturation transfer, z-spectra, | is listed by: FSL | Free, Freely available | SCR_024951 | Bayesian Chemical Exchange Saturation Transfer | 2026-08-04 09:45:38 | 0 | |||||||||
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Atlasquery Resource Report Resource Website |
Atlasquery (RRID:SCR_024944) | software application, software resource | Software tool designed to allow command line interrogation of atlas images supplied with FSL. It takes as input the name of one of FSL atlases together with either coordinate of interest or mask. | FSL, atlas images, command line interrogation, FSL atlases, | is a plug in for: FSL | Free, Freely available | SCR_024944 | 2026-08-04 09:45:41 | 0 | ||||||||||
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GROMACS topology editors Resource Report Resource Website 1+ mentions |
GROMACS topology editors (RRID:SCR_025013) | gmxtras | software application, software resource | Software tool as set of Python scripts to modify GROMACS topology files, by adding content from different topology files and other GROMACS input files. Useful, particularly when system components are assembled outside of GROMACS, or in different steps within GROMACS. This helps prevent users from having to copy and paste significantly large blocks of text within topology files. | GROMACS, topology files, force fields, modify GROMACS topology files, | Free, Available for download, Freely available | SCR_025013 | 2026-08-04 09:45:42 | 2 | ||||||||||
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FNIRT Resource Report Resource Website 1+ mentions |
FNIRT (RRID:SCR_024923) | software application, software resource | Software tool to perform linear registration, meaning that it will translate, rotate, zoom and shear one image to match it with another. | perform linear registration, translate, rotate, zoom, shear, image, match image with another image, | is a plug in for: FSL | Free, Freely available | SCR_024923 | 2026-08-04 09:45:40 | 8 | ||||||||||
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SIENAX Resource Report Resource Website |
SIENAX (RRID:SCR_024926) | software application, software resource | Software tool to estimate total brain tissue volume, from single image, normalized for skull size. | estimate total brain tissue volume, single image, normalized for skull size, |
is related to: SIENA is a plug in for: FSL |
Free, Freely available | https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/SIENA/UserGuide#SIENAX_-_Single-Time-Point_Estimation | SCR_024926 | 2026-08-04 09:45:40 | 0 | |||||||||
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fsl-cluster Resource Report Resource Website |
fsl-cluster (RRID:SCR_024938) | software application, software resource | Software application used to form clusters, report information about clusters and/or perform cluster based inference. | FSL, form clusters, report information about clusters, perform cluster based inference, | is a plug in for: FSL | Free, Freely available | SCR_024938 | cluster | 2026-08-04 09:45:40 | 0 | |||||||||
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XTRACT Resource Report Resource Website 1+ mentions |
XTRACT (RRID:SCR_024933) | software application, software resource | Software command line tool for automated tractography. Standardised protocols for automated tractography in human and macaque brain. | automated tractography, tractography, human, macaque, brain | is a plug in for: FSL | Medical Research Council PhD Studentship UK ; Marie Skłodowska-Curie Individual Fellowship Grant ; Biotechnology and Biological Sciences Research Council ; Netherlands Organization for Scientific Research NWO Netherlands ; Sir Henry Dale Wellcome Trust Fellowship UK ; MRC Career Development Fellowship UK ; Wellcome Trust Collaborative Award UK ; UK Engineering and Physical Sciences Research Council ; Wellcome Trust grant UK ; Human Connectome Project ; NIMH 1U54MH091657; McDonnell Center for Systems Neuroscience at Washington University ; NIH ; UK Biobank Resource ; Wellcome Trust |
PMID:32407993 | Free, Freely available | SCR_024933 | 2026-08-04 09:45:38 | 2 | ||||||||
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randomise Resource Report Resource Website 1+ mentions |
randomise (RRID:SCR_024937) | software application, software resource | Software tool for nonparametric permutation inference on neuroimaging data. | nonparametric permutation inference, neuroimaging data | is a plug in for: FSL | PMID:24530839 | Free, Freely available | SCR_024937 | 2026-08-04 09:45:38 | 9 | |||||||||
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Abaqus FEA Resource Report Resource Website 10+ mentions |
Abaqus FEA (RRID:SCR_024997) | software application, software resource | Software suite for finite element analysis and computer aided engineering. | Simulia, finite element analysis, computer aided engineering, | Restricted | https://en.wikipedia.org/wiki/Abaqus | SCR_024997 | Simulia Abaqus FEA | 2026-08-04 09:45:42 | 17 |
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Data set from Kravitz, Owen and Kretizer's 2012 paper "Optogenetic identification of striatal projection neuron subtypes during in vivo recordings."
