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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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U.S. Department of Commerce Resource Report Resource Website 1+ mentions |
U.S. Department of Commerce (RRID:SCR_009859) | Commerce.gov | institution | Executive department of the federal government concerned with promoting economic growth. Among its tasks are gathering economic and demographic data for business and government decision-making, and helping to set industrial standards. | Government granting agency |
is parent organization of: NIST - National Institute of Standards and Technology is parent organization of: National Oceanic and Atmospheric Administration is parent organization of: U.S. Census Bureau |
Crossref funder ID: 100000190, grid.239119.1, ISNI: 0000 0004 0478 6426, Wikidata: Q503577, nlx_144074 | https://ror.org/04chq2495 | SCR_009859 | United States Department of Commerce | 2026-08-08 11:59:24 | 2 | |||||||
|
U.S. Geological Survey Resource Report Resource Website 500+ mentions |
U.S. Geological Survey (RRID:SCR_010168) | USGS | institution | Scientific agency of the United States government. The scientists of the USGS study the landscape of the United States, its natural resources, and the natural hazards that threaten it. The organization's work spans the disciplines of biology, geography, geology, and hydrology. | Government granting agency | nlx_157935, grid.2865.9, ISNI: 121546924, Crossref funder ID: 100000203, Wikidata: Q193755 | https://ror.org/035a68863 | SCR_010168 | United States Geological Survey | 2026-08-08 11:59:27 | 538 | ||||||||
|
Biodiversity Ontology Resource Report Resource Website |
Biodiversity Ontology (RRID:SCR_010204) | BOF | ontology, data or information resource, controlled vocabulary | An ontology of biodiversity of INPA | owl | is listed by: BioPortal | nlx_157331 | SCR_010204 | 2026-08-08 11:59:27 | 0 | |||||||||
|
AllSeq Resource Report Resource Website |
AllSeq (RRID:SCR_010053) | AllSeq | service resource | Free online tools to find the best Sequencing Service provider for your project. | is listed by: OMICtools | Free | OMICS_01726 | SCR_010053 | 2026-08-08 11:59:25 | 0 | |||||||||
|
Cognitive Atlas Ontology Resource Report Resource Website |
Cognitive Atlas Ontology (RRID:SCR_010295) | COGAT | ontology, data or information resource, controlled vocabulary | Ontology that characterizes the state of current thought in cognitive science. It defines a set of mental concepts along with a set of mental tasks, and the measurement relations between those classes. | owl |
is listed by: BioPortal has parent organization: Cognitive Atlas |
nlx_157368 | SCR_010295 | 2026-08-08 11:59:18 | 0 | |||||||||
|
Common Terminology Criteria for Adverse Events Resource Report Resource Website 10+ mentions |
Common Terminology Criteria for Adverse Events (RRID:SCR_010296) | CTCAE | ontology, data or information resource, controlled vocabulary | A coding system for reporting adverse events that occur in the course of cancer therapy. It was derived from the Common Toxicity Criteria (CTC) v2.0 and is maintained by the Cancer Therapy Evaluation Program (CTEP) at the National Cancer Institution (NCI). | owl |
is listed by: BioPortal has parent organization: National Cancer Institute |
Cancer | nlx_157370 | SCR_010296 | 2026-08-08 11:59:26 | 14 | ||||||||
|
Comparative Data Analysis Ontology Resource Report Resource Website |
Comparative Data Analysis Ontology (RRID:SCR_010297) | CDAO | ontology, data or information resource, controlled vocabulary | A formalization of concepts and relations relevant to evolutionary comparative analysis, such as phylogenetic trees, OTUs (operational taxonomic units) and compared characters (including molecular characters as well as other types). CDAO is being developed by scientists in biology, evolution, and computer science | owl, biology, evolution, computer science, comparative analysis, phylogenetic tree, operational taxonomic unit, compared character, molecular |
is listed by: BioPortal is listed by: OBO is listed by: SourceForge |
Public domain | nlx_157371 | http://purl.bioontology.org/ontology/CDAO, http://purl.obolibrary.org/obo/cdao.owl | SCR_010297 | 2026-08-08 11:59:28 | 0 | |||||||
|
Content Archive Resource Exchange Lexicon Resource Report Resource Website |
Content Archive Resource Exchange Lexicon (RRID:SCR_010298) | CARELEX | ontology, data or information resource, controlled vocabulary | Categories and terms used to classify content (documents, images, etc) in electronic content repositories for life science / BioPharma. Initial version contains content model for use with clinical trial electronic Trial Master Files or eTMF archives. A Content model contains content classification categories (classes) and metadata properties (data properties). Data properties should be assigned to each Content Type. Recent changes include: addition of electronic signature support, medical imaging classifications. | owl | is listed by: BioPortal | nlx_157377 | http://www.carelex.org | SCR_010298 | 2026-08-08 11:59:18 | 0 | ||||||||
|
University of Lyon; France Resource Report Resource Website 1+ mentions |
University of Lyon; France (RRID:SCR_010178) | university | University of Lyon, located in Lyon and Saint-Étienne, France, is a center for higher education and research comprising 11 members and 24 associated institutions. | is parent organization of: I3-CRB: Interoperable IT Infrastructure for Biological Resources Centres / Biobanks - France | nlx_30442 | http://www.univ-lyon2.fr/international-/ | SCR_010178 | 2026-08-08 11:59:17 | 1 | ||||||||||
|
Amphibian Gross Anatomy Ontology Resource Report Resource Website 1+ mentions |
Amphibian Gross Anatomy Ontology (RRID:SCR_010291) | AAO | ontology, data or information resource, controlled vocabulary | A structured controlled vocabulary of the anatomy of Amphibians. Note that AAO is currently being integrated into Uberon. | obo | is listed by: BioPortal | nlx_157316 | SCR_010291 | 2026-08-08 11:59:28 | 1 | |||||||||
|
Disease core ontology applied to Rare Diseases Resource Report Resource Website |
Disease core ontology applied to Rare Diseases (RRID:SCR_010308) | HRDO | ontology, data or information resource, controlled vocabulary | A core ontology consistent with a metamodel (disorders and groups of disorders, genes, clinical signs and their relations) and an instantiation of this metamodel with Orphanet Data (available on http://orphadata.org). Research experiments demonstrated (i) efficient classifications generation based on SPARQL Construct, (ii) perspectives in semantic audit of a knowledge base, (iii) semantic comparison with OMIM (www.omim.org) using proximity measurements and (iv) opened perspectives in knowledge sharing (LORD, http://lord.bndmr.fr). Current production services of Orphanet developed ORDO, released in 2014, an ontology synchronized with their production database. | owl |
is listed by: BioPortal is related to: Orphanet |
INSERM | nlx_157388 | SCR_010308 | 2026-08-08 11:59:29 | 0 | ||||||||
|
San Diego State University; California; USA Resource Report Resource Website 1+ mentions |
San Diego State University; California; USA (RRID:SCR_009874) | SDSU | university | Public research university in San Diego, California. Founded in 1897 as San Diego Normal School, it is the third-oldest university in the 23-member California State University system. | is parent organization of: PRINSEQ | nlx_156724, Wikidata:Q913861, ISNI:0000 0001 0790 1491, Crossref funder ID:100007099, grid.263081.e | https://ror.org/0264fdx42 | SCR_009874 | San Diego State University | 2026-08-08 11:59:16 | 1 | ||||||||
|
IsoEM Resource Report Resource Website 10+ mentions |
IsoEM (RRID:SCR_009993) | IsoEM | software resource | Software package that can be used to infer isoform and gene expression levels from high-throughput transcriptome sequencing (RNA-Seq) data. | bio.tools |
is listed by: OMICtools is listed by: bio.tools is listed by: Debian has parent organization: University of Connecticut; Connecticut; USA |
biotools:isoem, OMICS_01278 | https://bio.tools/isoem | SCR_009993 | 2026-08-08 11:59:27 | 10 | ||||||||
|
Centre for Reviews and Dissemination Resource Report Resource Website 10+ mentions |
Centre for Reviews and Dissemination (RRID:SCR_010267) | CRD | institution | A research department of the University of York provides research-based information about the effects of health and social care interventions via their databases. The institute undertakes systematic reviews evaluating research evidence on health and public health questions of national and international importance. | evidence review, research review, public health, evidence synthesis, FASEB list | is related to: PROSPERO | National Institute for Health Research UK | Public, Available to the research community | nlx_156926 | http://www.york.ac.uk/ | SCR_010267 | University of York Centre for Reviews and Dissemination | 2026-08-08 11:59:28 | 40 | |||||
|
Current Procedural Terminalogy Hierarchy Resource Report Resource Website |
Current Procedural Terminalogy Hierarchy (RRID:SCR_010300) | CPTH | ontology, data or information resource, controlled vocabulary | Metathesaurus of current procedural terminalogy (CPT). | umls | is listed by: BioPortal | nlx_157379 | SCR_010300 | 2026-08-08 11:59:29 | 0 | |||||||||
|
Dengue Fever Ontology Resource Report Resource Website |
Dengue Fever Ontology (RRID:SCR_010304) | IDODEN | ontology, data or information resource, controlled vocabulary | An ontology for dengue fever. | owl | is listed by: BioPortal | Dengue fever | nlx_157383 | http://code.google.com/p/dengue-fever-ontology/ | SCR_010304 | 2026-08-08 11:59:29 | 0 | |||||||
|
Dermatology Lexicon Resource Report Resource Website |
Dermatology Lexicon (RRID:SCR_010305) | DERMLEX | ontology, data or information resource, controlled vocabulary | A standardized terminology of dermatologic diagnoses, therapies, procedures, and laboratory tests. | owl | is listed by: BioPortal | nlx_157384 | SCR_010305 | 2026-08-08 11:59:19 | 0 | |||||||||
|
Diagnosis Ontology of Clinical Care Classification Resource Report Resource Website |
Diagnosis Ontology of Clinical Care Classification (RRID:SCR_010306) | DOCCC | ontology, data or information resource, controlled vocabulary | Diagnosis ontology of clinical care classification. | owl | is listed by: BioPortal | nlx_157385 | SCR_010306 | 2026-08-08 11:59:27 | 0 | |||||||||
|
Phyre Resource Report Resource Website 500+ mentions |
Phyre (RRID:SCR_010270) | algorithm | A structure prediction system to reliably detect remote homologies. | has parent organization: Imperial College London; London; United Kingdom | PMID:19247286 | nlx_156932 | SCR_010270 | Protein Homology/Anology Recognition Engine | 2026-08-08 11:59:26 | 758 | |||||||||
|
BIOBASE Corporation Resource Report Resource Website 100+ mentions |
BIOBASE Corporation (RRID:SCR_010271) | commercial organization | THIS RESOURCE IS OUT OF SERVICE, documented on February 1st,2022. BIOBASE offers academic and non-profit organizations free access to TRANSFAC?? non-professional version with much reduced functionality and content compared to our professional database. | FASEB list |
is related to: Human Gene Mutation Database is parent organization of: Genome Trax is parent organization of: TRANSPATH is parent organization of: Gene Regulation Programs is parent organization of: TRANSCompel is parent organization of: Gene Regulation Databases |
THIS RESOURCE IS OUT OF SERVICE | nlx_156933 | SCR_010271 | 2026-08-08 11:59:28 | 184 |
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Data set from Kravitz, Owen and Kretizer's 2012 paper "Optogenetic identification of striatal projection neuron subtypes during in vivo recordings."
