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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
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Thermo Fisher: EVOS XL Core Imaging System Resource Report Resource Website 1+ mentions |
Thermo Fisher: EVOS XL Core Imaging System (RRID:SCR_022190) | instrument resource | Designed to eliminate complexities of microscopy, EVOS XL Core system captures high-quality brightfield cell images right at your benchtop within minute. Instrument for monitoring cell cultures, either within hood or in cell culture room. | EVOS XL Core Microscope, instrument, equipment, USEDit | is listed by: USEDit | Restricted | SCR_022190 | SciCrunch Registry | 2026-11-07 12:00:26 | 3 | ||||||||||
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StatAlign Resource Report Resource Website 1+ mentions |
StatAlign (RRID:SCR_001892) | data analysis software, data processing software, sequence analysis software, software application, software resource | Software package for Bayesian analysis of protein, DNA and RNA sequences. It utilizes multiple alignments, phylogenetic trees and evolutionary parameters to quantify uncertainty in these analyses. It is written in Java. | software package, bayesian, protein, dna, rna, sequencing, java, bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools is related to: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) |
PMID:23335014 | Free, Available for download, Freely available | biotools:StatAlign, OMICS_03743 | https://bio.tools/StatAlign | SCR_001892 | SciCrunch Registry | StatAlign 2.0 | 2026-11-07 12:00:28 | 1 | ||||||
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Near Infrared Camera Resource Report Resource Website |
Near Infrared Camera (RRID:SCR_022113) | NIRCam | instrument resource | Instrument aboard the James Webb Space Telescope. It has two major tasks, as imager from 0.6 to 5 micron wavelength, and as wavefront sensor to keep 18-section mirrors functioning as one. Imager covers infrared wavelength range 0.6 to 5 microns. NIRCam detects light from the earliest stars and galaxies in process of formation, population of stars in nearby galaxies, as well as young stars in Milky Way and Kuiper Belt objects. NIRCam is equipped with coronagraphs, instruments that allow astronomers to take pictures of very faint objects around central bright object, like stellar systems. | instrument, equipment, USEDit, imager, Webb, NASA | is listed by: USEDit | SCR_022113 | SciCrunch Registry | Near Infrared Camera | 2026-11-07 12:00:43 | 0 | |||||||||
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Creative Peptides Resource Report Resource Website |
Creative Peptides (RRID:SCR_022112) | commercial organization | Creative peptides is specialized in process development and manufacturing of bioactive peptides.Offers custom peptide synthesis, process development, manufacturing as well as catalog products for customers in industry and research area. Creative Peptides is staffed by scientific teams with experts in the fields of peptide technology, antibodies and synthetic chemistry. | bioactive peptides, custom peptide synthesis, process development, manufacturing, peptide technology, antibodies, synthetic chemistry |
is parent organization of: Creative Peptides Antibody Protein Bacteria Interactions Service Resource is parent organization of: Creative Peptides Backbone Cyclized Peptides Service Resource is parent organization of: Creative Peptides Cell Penetrating Peptide Design and Synthesis Service Resource is parent organization of: Creative Peptides Cosmetic Peptides Service Resource is parent organization of: Creative Peptides Design Platform Service Resource is parent organization of: Creative Peptides Peptide Drug Discovery Service Resource is parent organization of: Creative Peptides Target Validation in Peptide Drug Discovery Service Resource is parent organization of: Creative Peptides Target Analysis In Silico Service Resource is parent organization of: Creative Peptides Target Analysis in Bioscience Service Resource is parent organization of: Creative Peptides Hit Identification in Peptide Drug Discovery Service Resource is parent organization of: Creative Peptides PNA Synthesis Service Resource is parent organization of: Creative Peptides PNA Oligomer Synthesis Service Resource is parent organization of: Creative Peptides Chemical Synthesis of PNA Oligomers with Fmoc Service Resource is parent organization of: Creative Peptides Synthesis by Mmt Chemistry Service Resource is parent organization of: Creative Peptides PNA/DNA Chimera Synthesis Service Resource is parent organization of: Creative Peptides Total Peptide Library Construction Service Resource is parent organization of: Creative Peptides Peptide Drug Bioconjugations Service Resource is parent organization of: Creative Peptides: Peptide Lead Optimization Service Resource is parent organization of: Creative Peptides: Formulation Development Service Resource is parent organization of: Creative Peptides PNA Modification Service Resource is parent organization of: Creative Peptides PNA Modification of Connection between Nucleobase and Backbone Service Resource is parent organization of: Creative Peptides PNA Backbone Modification Service Resource is parent organization of: Creative Peptides PNA N/C Terminal Modification Service Resource is parent organization of: Creative Peptides PNA Modification by C Replacement Service Resource is parent organization of: Creative Peptides: Peptide Synthesis Service Resource is parent organization of: Creative Peptides Active Peptide Ingredients from Natural Products Service Resource is parent organization of: Creative Peptides Peptide Drug Biosynthesis Service Resource is parent organization of: Creative Peptides Peptide Drug Chemical Synthesis Service Resource is parent organization of: Creative Peptides Custom Peptide Synthesis Service Resource |
SCR_022112 | SciCrunch Registry | 2026-11-07 12:00:26 | 0 | |||||||||||
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Ruffus Resource Report Resource Website 1+ mentions |
Ruffus (RRID:SCR_022196) | software library, software resource, software toolkit | Software lightweight Python library for computational pipelines. Reproducible pipeline framework. | computational pipelines creation, computational pipelines | Medical Research Council | DOI:10.1093/bioinformatics/btq524 | Free, Available for download, Freely available | SCR_022196 | SciCrunch Registry | 2026-11-07 12:00:27 | 3 | |||||||||
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MashMap Resource Report Resource Website 10+ mentions |
MashMap (RRID:SCR_022194) | alignment software, data processing software, image analysis software, software application, software resource | Software tool as fast approximate aligner for long DNA sequences. Used for computing local alignment boundaries between long DNA sequences. | mapping genome assembly, long DNA sequences, long reads, reference genome, long DNA sequences aligner | National Human Genome Research Institute ; NIH ; NSF CCF1816027 |
PMID:30423094 DOI:10.1007/978-3-319-56970-3_5 |
Free, Available for download, Freely available | SCR_022194 | SciCrunch Registry | 2026-11-07 12:00:26 | 31 | |||||||||
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TORTOISE Resource Report Resource Website 100+ mentions |
TORTOISE (RRID:SCR_001645) | TORTOISE | data processing software, image analysis software, image processing software, software application, software resource | An integrated and flexible software package for processing of DTI data, and in general for the correction of diffusion weighted images to be used for DTI and potentially for high angular resolution diffusion imaging (HARDI) analysis. It can be run on both Linux and Mac platforms. It is composed of two modules named DIFF PREP and DIFF CALC. * DIFF_PREP - software for image resampling, motion, eddy current distortion and susceptibility induced EPI distortion corrections, and for re-orientation of data to a common space * DIFF_CALC - software for tensor fitting, error analysis, color map visualization and ROI analysis In addition, TORTOISE contains additional Utilities, such as a tool for the analysis of multi-center phantom data. | diffusion mri, dti, image motion correction, distortion correction, tensor computation, visualization, analysis, tensor fitting, modeling, magnetic resonance, tensor metric |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: Diffusion MRI of Traumatic Brain Injury has parent organization: National Institute of Child Health and Human Development |
NICHD | Free, Available for download, Freely available | nlx_153921 | http://www.nitrc.org/projects/tortoise | SCR_001645 | SciCrunch Registry | Tolerably Obsessive Registration and Tensor Optimization Indolent Software Ensemble | 2026-11-07 12:00:09 | 108 | |||||
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GRS Resource Report Resource Website 1+ mentions |
GRS (RRID:SCR_001008) | data analysis software, data management software, data processing software, software application, software resource | A compression tool for efficient storage of Genome Re-Sequencing data. GRS processes genome sequence data without use of reference SNPs and other variants. It can also automatically rebuild the individual genome sequence data using the reference genome sequence. | data analysis software, data management software, compression tool, data compression, storage, genome, resequencing | is listed by: OMICtools | THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_00960 | SCR_001008 | SciCrunch Registry | 2026-11-07 12:00:27 | 2 | |||||||||
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FACTA+. Resource Report Resource Website 1+ mentions |
FACTA+. (RRID:SCR_001767) | FACTA+ | data access protocol, service resource, software resource, web service | Text mining tool to discover associations between biomedical concepts from MEDLINE articles. Use the service from your browser or via a Web Service. The whole MEDLINE corpus containing more than 20 million articles is indexed with an efficient text search engine, and it allows you to navigate such associations and their textual evidence in a highly interactive manner - the system accepts arbitrary query terms and displays relevant concepts immediately. A broad range of important biomedical concepts are covered by the combination of a machine learning-based term recognizer and large-scale dictionaries for genes, proteins, diseases, and chemical compounds. There is also a FACTA+ visualization service that can be found here: http://www.nactem.ac.uk/facta-visualizer/ | text mining, gene, protein, disease, symptom, drug, enzyme, compound, biomedical, association, machine learning, chemical, text-mining software, bio.tools |
is listed by: OMICtools is listed by: FORCE11 is listed by: bio.tools is listed by: Debian is related to: MEDLINE has parent organization: National Centre for Text Mining |
JISC | PMID:18772154 | Free, Freely available | biotools:facta_plus, nif-0000-10272, OMICS_01181 | http://refine1-nactem.mc.man.ac.uk/facta/, https://bio.tools/facta_plus | SCR_001767 | SciCrunch Registry | Finding Associated Concepts with Text Analysis | 2026-11-07 12:00:28 | 2 | ||||
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NTAP Resource Report Resource Website 10+ mentions |
NTAP (RRID:SCR_001488) | NTAP | data analysis software, data processing software, software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 23,2022. Software for tiling array data analysis to survey the genome-wide binding sites of transcription factor HY5 in Arabidopsis and the genome-wide histone modifications/DNA methylation level in rice. It was developed in the process of generating NimbleGen analysis. Written in R and Perl. | software, tiling array, data analysis, rice, arabidopsis, hy5, transcription factor, genome |
is listed by: OMICtools has parent organization: Peking University; Beijing; China |
PMID:19468055 | THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_00808 | SCR_001488 | SciCrunch Registry | NimbleGen Tiling array Analysis Package, NimbleGen Tilingarray Analysis Package | 2026-11-07 12:00:28 | 10 | ||||||
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BOC Sciences Ligand Design for Target Protein Service Resource Resource Report Resource Website |
BOC Sciences Ligand Design for Target Protein Service Resource (RRID:SCR_022124) | service resource | Service provider in drug discovery and development. Provides one stop development, which has become strategy in field of small molecular drug discovery. Provides ligand design for target protein to customers to meet new drug discovery goals. | Ligand Design for Target Protein, PROTAC, BOC Sciences, biomedical service | is related to: BOC Sciences | Restricted | SCR_022124 | SciCrunch Registry | BOC Sciences Ligand Design for Target Protein, BOC Sciences PROTAC Ligand Design for Target Protein | 2026-11-07 12:00:24 | 0 | |||||||||
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BOC Sciences Target Protein Services Service Resource Resource Report Resource Website |
BOC Sciences Target Protein Services Service Resource (RRID:SCR_022123) | service resource | Service provider in drug discovery and research. Provides one stop proteolysis targeting molecular drug discovery based on chimeric. Provides target protein services to customers to meet new drug discovery goals. | Target Protein, Protein Degradation, PROTAC, BOC Sciences, biomedical service, proteolysis targeting, molecular drug discovery | is related to: BOC Sciences | Restricted | SCR_022123 | SciCrunch Registry | BOC Sciences Target Protein Services, Target Protein Services, BOC Sciences PROTAC Target Protein Services | 2026-11-07 12:00:43 | 0 | |||||||||
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Creative Peptides Hit Identification in Peptide Drug Discovery Service Resource Resource Report Resource Website |
Creative Peptides Hit Identification in Peptide Drug Discovery Service Resource (RRID:SCR_022122) | service resource | Provides Medium or high-throughput screening to perform rapid screening thousands of samples with biological activities at model organism, cell, pathway, or molecular levels, accelerating target analysis procedure; High content screening to analyze the way peptide compound interacts with target at subcellular level; Fragment screening to obtain higher affinity lead ligands by growing low molecular weight chemical fragments into larger drug like molecules;Virtual screening to automatically evaluate large databases with known 3D structures; Artificial Intelligence for difficult targets to support discovering and developing more drug candidates; Knowledge based design in hit identification;Hits identified by NMR screening. | Creative Peptides, biomedical service, Hit Identification in Peptide Drug Discovery, Hit Identification, Peptide Drug Discovery, | has parent organization: Creative Peptides | Restricted | SCR_022122 | SciCrunch Registry | Hit Identification in Peptide Drug Discovery, Creative Peptides Hit Identification in Peptide Drug Discovery | 2026-11-07 12:00:26 | 0 | |||||||||
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Creative Peptides Target Analysis In Silico Service Resource Resource Report Resource Website |
Creative Peptides Target Analysis In Silico Service Resource (RRID:SCR_022120) | service resource | Services include Binding site identification and druggability assessment, Protein sequence analysis, Protein multiple sequences alignments and selectivity analysis,Analysis of available structural data and protein structure,Homology modeling for targets lacking crystal structures,Design appropriate peptides against specific targets,Water assessment. | Creative Peptides, biomedical service, Target Analysis In Silico, peptides discovery strategy | has parent organization: Creative Peptides | Restricted | SCR_022120 | SciCrunch Registry | Target Analysis In Silico, Creative Peptides Target Analysis In Silico | 2026-11-07 12:00:24 | 0 | |||||||||
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Creative Peptides Target Validation in Peptide Drug Discovery Service Resource Resource Report Resource Website |
Creative Peptides Target Validation in Peptide Drug Discovery Service Resource (RRID:SCR_022119) | service resource | Services include Target analysis in silico, Protein sequence analysis and Homology modeling for targets; Target analysis in bioscience, Cell based models. | Creative Peptides, Target Validation in Peptide Drug Discovery, Target Validation, Peptide Drug Discovery, biomedical service, | has parent organization: Creative Peptides | Restricted | SCR_022119 | SciCrunch Registry | Target Validation in Peptide Drug Discovery, Creative Peptides Target Validation in Peptide Drug Discovery | 2026-11-07 12:00:43 | 0 | |||||||||
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Creative Peptides Peptide Drug Discovery Service Resource Resource Report Resource Website |
Creative Peptides Peptide Drug Discovery Service Resource (RRID:SCR_022118) | service resource | Services include Structure Based Drug Discovery to design and optimize hits compounds using structural information obtained from X-ray crystallography, cryo-EM or NMR; Cell Based Drug Discovery by selecting correct cell models and culture to study pharmacological and biochemical properties; Ligand Based Drug Discovery. | Peptide Drug Discovery, Creative Peptides, biomedical service | has parent organization: Creative Peptides | Restricted | SCR_022220 | SCR_022118 | SciCrunch Registry | Peptide Drug Discovery, Creative Peptides Peptide Drug Discovery | 2026-11-07 12:00:26 | 0 | ||||||||
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Least Bridges Graphs Mathematica package Resource Report Resource Website |
Least Bridges Graphs Mathematica package (RRID:SCR_022115) | data analysis software, data processing software, software application, software resource | Software tool as freely distributed computational method for analyzing distance relationships. | analyzing distance relationships | Free, Freely available | SCR_022115 | SciCrunch Registry | 2026-11-07 12:00:24 | 0 | |||||||||||
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Open Source Brain Resource Report Resource Website 10+ mentions |
Open Source Brain (RRID:SCR_001393) | OSB | data or information resource, data repository, database, service resource, storage service resource | A resource for sharing and collaboratively developing computational models of neural systems. While models can be submitted and developed in any format, the use of open standards such as NeuroML and PyNN is encouraged, to ensure transparency, modularity, accessibility and cross simulator portability. OSB will provide advanced facilities to analyze, visualize and transform models in these formats, and to connect researchers interested in models of specific neurons, brain regions and disease states. Research themes include: Basal ganglia modelling, Cerebellar Granule cell modelling, Cerebellar modelling, Hippocampal modelling, Neocortical modelling, Whole brain models. Additional themes are welcome. | model, neuroml, pynn, computational model, neural system, neuron, disease, data analysis service, visualization, 3d explorer, network, ion channel distribution, ion channel, microcircuit |
uses: PyNN uses: NeuroML is used by: NIF Data Federation is listed by: Integrated Models is related to: neuroConstruct is related to: NWB Explorer is related to: Allen Institute for Brain Science has parent organization: University College London; London; United Kingdom |
Wellcome Trust | Free, Freely Available | nlx_152590 | SCR_001393 | SciCrunch Registry | OpenSourceBrain | 2026-11-07 12:00:27 | 27 | ||||||
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Thermo Fisher: Orbitrap Eclipse nanoLC/MS system Resource Report Resource Website 10+ mentions |
Thermo Fisher: Orbitrap Eclipse nanoLC/MS system (RRID:SCR_022212) | instrument resource | System includes Thermo Orbitrap Eclipse Tribid mass spectrometer and Waters M-Class Acquity nanoUPLC. This platform features sequential acquisition capabilities and multiple fragmentation types, enabling complex, in depth proteomic experiments. | Thermo Orbitrap Eclipse Tribrid mass spectrometer, Waters M-Class Acquity nanoUPLC, instrument, equipment, USEDit | is used by: Stanford University Vincent Coates Foundation Mass Spectrometry Laboratory Core Facility | NIH S10 OD030473 | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_022212.pdf | SCR_022212 | SciCrunch Registry | Thermo Orbitrap Eclipse nanoLC/MS, Orbitrap Eclipse nanoLC/MS | 2026-11-07 12:00:26 | 16 | ||||||||
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Creative Biolabs Model Organism Antibodies Service Resource Resource Report Resource Website |
Creative Biolabs Model Organism Antibodies Service Resource (RRID:SCR_022177) | antibody supplier, commercial organization, material resource, reagent supplier | Antibody group provides researchers with functional proteomics research platform. Antibody customization service provider. Custom antibody development team can work with you to create customized antibody solution to meet your specific research needs. Provides monoclonal antibody screening. Prepares monoclonal antibody library to screen monoclonal antibodies for appropriate peptide epitope of each protein. | Creative Biolabs, monoclonal antibody development, Model Organisms for Biomedical Research, functional proteomics, monoclonal antibody screening, biomedical service | has parent organization: Creative Biolabs | Restricted | SCR_022177 | SciCrunch Registry | 2026-11-07 12:00:27 | 0 |
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Data set from Kravitz, Owen and Kretizer's 2012 paper "Optogenetic identification of striatal projection neuron subtypes during in vivo recordings."
