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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
Open-access, community-driven knowledgebase designed to crowdsource and curate evidence on the clinical significance of cancer-related genomic variants. It helps researchers and clinicians interpret tumor DNA mutations to guide precision medicine.
Proper citation: CivicDb (RRID:SCR_028055) Copy
https://github.com/immunogenomics/starCAT
Software pipeline that improves T cell characterization by simultaneously quantifying predefined gene expression programs (scRNA-Seq) capturing activation states and cellular subsets. Used to score cells based on a fixed, multidataset catalog of Gene Expression Programs from any tissues or cell-type.
Proper citation: starCAT (RRID:SCR_028475) Copy
https://github.com/Taiji-pipeline/Taiji
Software integrative analysis pipeline for analyzing bulk/single-cell ATAC-seq and RNA-seq data. Integrative multi-omics data analysis framework. It can be used as a standalone pipeline to analyze ATAC-seq, RNA-seq, single cell ATAC-seq or Drop-seq data. Used to integrate diverse datasets and use these information to construct regulatory network and identify candidate driver genes.
Proper citation: Taiji (RRID:SCR_028464) Copy
https://github.com/immunogenomics/presto
Software R package for fast Wilcoxon rank sum test and auROC analysis.
Proper citation: presto (RRID:SCR_028647) Copy
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Data set from Kravitz, Owen and Kretizer's 2012 paper "Optogenetic identification of striatal projection neuron subtypes during in vivo recordings."
