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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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ImmuQuest Resource Report Resource Website 10+ mentions |
ImmuQuest (RRID:SCR_013461) | antibody supplier, commercial organization, material resource, reagent supplier | An Antibody supplier | nlx_152390 | SCR_013461 | SciCrunch Registry | ImmuQuest Ltd. | 2026-11-07 11:57:50 | 30 | |||||||||||
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AS Diagnostik Resource Report Resource Website |
AS Diagnostik (RRID:SCR_013343) | antibody supplier, commercial organization, material resource, reagent supplier |
THIS RESOURCE IS NO LONGER IN SERVICE. Documented September 15, 2017.\\\\\\ \\\\\\ An Antibody supplier |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_152281 | SCR_013343 | SciCrunch Registry | 2026-11-07 11:57:46 | 0 | |||||||||||
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BioIE: Extracting Informative Sentences From the Biomedical Literature Resource Report Resource Website 1+ mentions |
BioIE: Extracting Informative Sentences From the Biomedical Literature (RRID:SCR_013464) | data or information resource, database, software resource, software toolkit | BioIE is a rule-based system that extracts informative sentences relating to protein families, their structures, functions and diseases from the biomedical literature. Based on manual definition of templates and rules, it aims at precise sentence extraction rather than wide recall. After uploading source text or retrieving abstracts from MEDLINE, users can extract sentences based on predefined or user-defined template categories. BioIE also provides a brief insight into the syntactic and semantic context of the source-text by looking at word, N-gram and MeSH-term distributions. Important Applications of BioIE are in, for example, annotation of microarray data and of protein databases. | family, function, biomedical, context, disease, distribution, literature, medline interfaces, mesh-term, microarray, n-gram, protein, semantic, structure, syntactic | has parent organization: University of Manchester; Manchester; United Kingdom | nif-0000-21055 | SCR_013464 | SciCrunch Registry | BioIE | 2026-11-07 11:57:39 | 2 | |||||||||
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Coordination and sustainability of international mouse informatics resources Resource Report Resource Website 1+ mentions |
Coordination and sustainability of international mouse informatics resources (RRID:SCR_013345) | data or information resource, portal, topical portal | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 2, 2022. Much of the current effort in functional genomics, and our understanding of the biology of human disease, is underpinned by informatics infrastructures served by the scattered collection of relevant databases which exists in Europe. This infrastructure is essential for the support of a European Research Area in mouse functional genomics. CASIMIR, a coordination action of the 6th Framework Programme of the European Commission, will focus on co-ordination and integration of databases set up in support of FP5 and FP6 projects containing experimental data, including sequences, and material resources such as biological collections, relevant to the use of the mouse as a model organism for human disease. Interoperability of disseminated databases potentially provides enormous synergy in the provision, integration and analysis of a wide range of data with concomitant added value for research projects. Having set standards and benchmarks the proposed action will then reach out to co-ordinate other European and International databases and consult with the Community. EU FlagThe CASIMIR project is funded by the European Commission within its FP6 Programme, under the thematic area Life sciences, genomics and biotechnology for health, contract number LSHG-CT-2006-037811 | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-00366 | SCR_013345 | SciCrunch Registry | CASIMIR | 2026-11-07 11:58:06 | 4 | ||||||||||
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R/FEST Resource Report Resource Website 1+ mentions |
R/FEST (RRID:SCR_013347) | software application, software resource | An R package for simulations and likelihood calculations of pair-wise family relationships using DNA marker data. (entry from Genetic Analysis Software) | gene, genetic, genomic, r | is listed by: Genetic Analysis Software | nlx_154111, SCR_000830, nlx_154582 | SCR_013347 | SciCrunch Registry | FEST | 2026-11-07 11:57:48 | 2 | |||||||||
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TreeView Resource Report Resource Website 1000+ mentions |
TreeView (RRID:SCR_013503) | TreeView | software resource | Software to graphically browse results of clustering and other analyses from Cluster. |
is listed by: OMICtools is listed by: Debian is listed by: SoftCite has parent organization: University of California at Berkeley; Berkeley; USA |
DOI:10.1093/bioinformatics/bth349 | OMICS_01574 | https://sources.debian.org/src/treeview/ | SCR_013503 | SciCrunch Registry | 2026-11-07 11:57:47 | 2754 | ||||||||
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EISEN LAB Resource Report Resource Website 100+ mentions |
EISEN LAB (RRID:SCR_013508) | data or information resource, laboratory portal, organization portal, portal | Welcome to Michael Eisens lab in the Howard Hughes Medical Institute (HHMI) at University of California at Berkeley (UCB) and the Lawrence Berkeley National Lab (LBNL). We are part of the Department of Molecular and Cell Biology of UCB and the Genomics Division of LBNL, and the. We are located in Stanley Hall on the Berkeley campus.Our lab applies computational and experimental genomic approaches to study how genome sequences specify organismal form and function. We are particularly interested in the regulation of gene expression, and focus on how the information that specifies when and where genes are expressed is encoded in genome sequences, the role that regulated gene expression plays in animal development and the response of microbes to their environments, and how variation in and evolution of gene expression contributes to phenotypic variation and the remarkable diversity of life on Earth. This site contains a more detailed description of our research projects, an introduction to members of the lab, reprints of all of our publications, free downloadable and web-based software. Sponsor. Experimental work described here was supported by a Howard Hughes Medical Institute Investigator award to MBE and by National Institutes of Health (NIH) grant GM704403 to MBE and MDB. Computational analyses were supported in by NIH grant HG002779 to MBE. Work at Lawrence Berkeley National Laboratory was conducted under Department of Energy contract DE-AC02-05CH11231. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript. | has parent organization: University of California at Berkeley; Berkeley; USA | nif-0000-30508 | http://rana.lbl.gov/EisenSoftware.htm | SCR_013508 | SciCrunch Registry | EISEN LAB | 2026-11-07 11:57:50 | 143 | |||||||||
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ScanAlyze Resource Report Resource Website 10+ mentions |
ScanAlyze (RRID:SCR_013507) | ScanAlyze | software resource | Software to process fluorescent images of microarrays. |
is listed by: OMICtools has parent organization: University of California at Berkeley; Berkeley; USA |
OMICS_00846 | SCR_013507 | SciCrunch Registry | 2026-11-07 11:58:08 | 43 | ||||||||||
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CNV-seq Resource Report Resource Website 100+ mentions |
CNV-seq (RRID:SCR_013357) | CNV-seq | software resource | A method for detecting DNA copy number variation (CNV) using high-throughput sequencing., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | bio.tools |
is listed by: OMICtools is listed by: bio.tools is listed by: Debian |
THIS RESOURCE IS NO LONGER IN SERVICE | biotools:cnv-seq, OMICS_00339 | https://bio.tools/cnv-seq | SCR_013357 | SciCrunch Registry | 2026-11-07 11:57:46 | 167 | |||||||
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MEDEA Resource Report Resource Website 100+ mentions |
MEDEA (RRID:SCR_013356) | MEDEA | software resource | THIS RESOURCE IS NO LONGER IN SERVCE, documented June, 2019.Comparative Genomic Visualization with Adobe Flash. |
is listed by: OMICtools has parent organization: Broad Institute |
THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_00941 | SCR_013356 | SciCrunch Registry | 2026-11-07 11:57:38 | 119 | |||||||||
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BioMedical Materials Consortium Resource Report Resource Website 1+ mentions |
BioMedical Materials Consortium (RRID:SCR_013678) | BMM | consortium, data or information resource, organization portal, portal | The BioMedical Materials (BMM) consortium focuses on advancing the use of new materials to biomedical research. As a public-private partnership, the consortium includes the participation of over 50 leading institutions, corporations, and health foundations, with support from the government of the Netherlands. The activities of this consortium have ended. The website and materials will be available until 12-31-2015. | biomedical, materials, | Government of the Netherlands | SCR_013678 | SciCrunch Registry | 2026-11-07 11:57:42 | 1 | ||||||||||
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AngioBio Resource Report Resource Website 10+ mentions |
AngioBio (RRID:SCR_013556) | antibody supplier, commercial organization, material resource, reagent supplier | An Antibody supplier | nlx_152271 | SCR_013556 | SciCrunch Registry | 2026-11-07 11:57:40 | 28 | ||||||||||||
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B-Bridge International Resource Report Resource Website 1+ mentions |
B-Bridge International (RRID:SCR_013559) | antibody supplier, commercial organization, material resource, reagent supplier | An Antibody supplier | nlx_152289 | SCR_013559 | SciCrunch Registry | B-Bridge International Inc., B-Bridge International Inc | 2026-11-07 11:57:52 | 2 | |||||||||||
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Aviva Systems Biology Resource Report Resource Website 1+ mentions |
Aviva Systems Biology (RRID:SCR_013560) | antibody supplier, commercial organization, material resource, reagent supplier | An Antibody supplier | nlx_152288 | SCR_013560 | SciCrunch Registry | 2026-11-07 11:57:40 | 4 | ||||||||||||
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Astra Biotech GmbH Resource Report Resource Website |
Astra Biotech GmbH (RRID:SCR_013564) | antibody supplier, commercial organization, material resource, reagent supplier | An Antibody supplier | nlx_152283 | SCR_013564 | SciCrunch Registry | Astra Biotech | 2026-11-07 11:57:52 | 0 | |||||||||||
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Amersham Biosciences Resource Report Resource Website 50+ mentions |
Amersham Biosciences (RRID:SCR_013566) | antibody supplier, commercial organization, material resource, reagent supplier | An Antibody supplier | is listed by: GE Healthcare | nlx_152267 | SCR_013566 | SciCrunch Registry | 2026-11-07 11:57:40 | 66 | |||||||||||
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mri3dX Resource Report Resource Website 1+ mentions |
mri3dX (RRID:SCR_013609) | data processing software, image processing software, software application, software resource | A tool for visualization of structural and functional MRI volumes. Features include structural and functional overlay display of volume sections, volume annotation, ROI analysis, interfacing with FSL''s brain extraction, and 3D rendering. mri3dX should run on most unix workstations, but requires Motif and OpenGL/Mesa graphics libraries. | nif-0000-00330 | http://www.aston.ac.uk/lhs/staff/singhkd/mri3dX/mri3dX.jsp | SCR_013609 | SciCrunch Registry | MRI3dX, MRI structural/functional Visualization and Analysis | 2026-11-07 11:57:49 | 9 | ||||||||||
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Alpha Diagnostic International Resource Report Resource Website 1+ mentions |
Alpha Diagnostic International (RRID:SCR_013568) | ADI | antibody supplier, commercial organization, material resource, reagent supplier | An Antibody supplier | nlx_152264 | SCR_013568 | SciCrunch Registry | Alpha Diagnostic International Inc., Alpha Diagnostic International Inc, Alpha Diagnostic Intl. Inc. | 2026-11-07 11:57:48 | 4 | ||||||||||
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Alexis Resource Report Resource Website 10+ mentions |
Alexis (RRID:SCR_013573) | antibody supplier, commercial organization, material resource, reagent supplier | An Antibody supplier | nlx_152260 | SCR_013573 | SciCrunch Registry | 2026-11-07 11:57:48 | 21 | ||||||||||||
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Neurotrophic Lab Resource Report Resource Website |
Neurotrophic Lab (RRID:SCR_013572) | data or information resource, portal, topical portal | We are interested on the mechanisms by which environmental factors affect neuronal health. We have found that trophic factors endogenous to the brain and spinal cord can be induced by the practice of select behaviors. We have recently reported that physical activity, learning, and nutritional factors control neurotrophins in the brain. These findings opened the exciting possibility that regulation of trophic factors by behavior can be a pivotal mechanism by which specific experiences can impact the structure and function of the CNS. It may account for the improvement of CNS function after trauma provided by rehabilitative therapies. On the contrary, it may explain the decay in function in aging or degenerative diseases following a lack of stimulation. These two avenues provide direction for my research program: 1) How trophic factors induced by activity can help functional recovery following brain and spinal cord trauma. We are using several exercise models to boost the production of trophic factors in the brain and spinal cord. Our goal is to provide critical information to guide the design of behavioral therapies for the reduction of the severity of insult or disease, and to increase CNS function. 2) We are evaluating the effects of lifestyle on trophic factor production, with resulting effects on circuit remodeling, synaptic function, and cognition. We believe that changes in trophic factor as a result of select experiences can affect neuronal health with profound consequences for cognitive function. :lab : | has parent organization: University of California at Los Angeles; California; USA | nif-0000-00396 | SCR_013572 | SciCrunch Registry | NeurotrophicLab | 2026-11-07 11:57:40 | 0 |
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Data set from Kravitz, Owen and Kretizer's 2012 paper "Optogenetic identification of striatal projection neuron subtypes during in vivo recordings."
