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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
Institute is entirely devoted to psycholinguistics – the study of how we produce and understand language, and how we acquire these skills as first or second language learners. The only institution in the world entirely dedicated to psycholinguistics, and is also one of only three among total of 90 within the Max Planck Society to be located outside Germany.
Proper citation: Max Planck Institute for Psycholinguistics; Nijmegen; Netherlands (RRID:SCR_021706) Copy
https://archive.mpi.nl/tla/elan
Software annotation tool for audio and video recordings. Annotation can be sentence, word or gloss, comment, translation or description of any feature observed in media. Annotations can be created on multiple layers. Tiers can be hierarchically interconnected. Annotation can either be time-aligned to media or it can refer to other existing annotations. Content of annotations consists of Unicode text and annotation documents are stored in XML format (EAF).
Proper citation: ELAN (RRID:SCR_021705) Copy
https://github.com/igordot/sns
Set of automated workflows for common sequencing based (Illumina) protocols, such as RNA-seq, ChIP-seq, ATAC-seq, WGBS/RRBS methylation, whole genome/exome/targeted variant detection, and contaminant screening. Sequencing data analysis pipelines.
Proper citation: Seq-N-Slide (RRID:SCR_021752) Copy
https://bitbucket.org/dries_decap/halvadeforspark/
Software implements germline and somatic variant calling pipelines based on best practices pipelines from Broad Institute using Spark framework. Produces VCF output file which contains single nucleotide polymorphisms (SNPs) and short insertions and deletions (indels) when supported by used tools. Program requires Spark on either local cluster with one or more nodes, Amazon EMR cluster or Docker image to run.
Proper citation: Halvade Somatic (RRID:SCR_021771) Copy
http://justusrandolph.net/kappa/
Software tool can be used to calculate kappa, chance adjusted measure of agreement, for any number of cases, categories, or raters.
Proper citation: Online Kappa Calculator (RRID:SCR_021770) Copy
https://www.cellscale.com/products/microtester/
System includes MicroTester G2 device and software. MicroTester G2 is mechanical test device that can be used to test properties of variety of tissues and materials. Main components of device are load application microbeam, actuators, imaging system, and fluid bath/test chamber. MicroTester G2 software is divided into two modules: data collection module and review and analysis module.
Proper citation: CellScale: MicroTester G2 system (RRID:SCR_022034) Copy
Public university located in center of Iran in World Heritage city of Yazd.
Proper citation: Shahid Sadoughi University of Medical Sciences; Yazd; Iran (RRID:SCR_022031) Copy
Software tool for learning fundamentals of RSLogix ladder logic programming.
Proper citation: LogiXPro (RRID:SCR_021978) Copy
https://www.coolled.com/products/pe-300ultra/
Highly controllable fluorescence microscopy Illumination System which offers broad spectrum LED illumination for imaging most common fluorophores. System offers precise control over wavelength irradiance and shuttering. Used for LED microscope lighting.
Proper citation: CoolLED: pE-300ultra (RRID:SCR_021972) Copy
https://www.physikinstrumente.com/en/products/motion-control-software/
Software to control positioning systems without their own macro facility.
Proper citation: PI Motion Control Software (RRID:SCR_021867) Copy
https://github.com/QZH2022/germline_flow
High performance of GPU accelerated variant calling tool in genome data analysis.
Proper citation: germline flow (RRID:SCR_021906) Copy
https://www.microbialtec.com/aerobic-cultivation.html
Aerobic cultivation services to culture various microorganisms that can be isolated from readily available sources.
Proper citation: Creative Biogene Aerobic Cultivation Service Resource (RRID:SCR_022099) Copy
https://www.bcgsc.ca/resources/software/ntcard
Software tool for estimating k-mer coverage histogram of genomics data. Streaming algorithm for estimating frequencies of k-mers in genomics datasets.
Proper citation: ntCard (RRID:SCR_022010) Copy
https://www.microbialtec.com/strain-anaerobic-culture.html
Service for anaerobic bacteria cultivation and culture using variety of culture media and culture conditions. Includes collection, strain cultivation, isolation, identification and strain preservation.
Proper citation: Creative Biogene Strain Anaerobic Culture Service Resource (RRID:SCR_022097) Copy
https://www.med-associates.com/product/deluxe-behavioral-test-package/
Operant behavior test package for rat built to meet needs of research studies requiring additional reward and stimulus flexibility. One of Med Associates, Inc. operant conditioning and general behavior product.
Proper citation: Med Associates: Deluxe Behavioral Test Package with Rat Modular Chamber (RRID:SCR_021938) Copy
University has campuses located in Southern Denmark and on Zealand with main campus in Odense and regional campuses in Slagelse, Kolding, Esbjerg and Sønderborg. University offers joint programes in co-operation with University of Flensburg and University of Kiel.
Proper citation: University of Southern Denmark; Denmark (RRID:SCR_021943) Copy
https://www.alveolelab.com/our-products/leonardo-photopatterning-software/
Photopatterning software to control PRIMO system including UV illumination module, microscope, camera and stage, and to precisely define experimental conditions.Used to design your own micropatterning manipulations.
Proper citation: Alveole Leonardo (RRID:SCR_021940) Copy
https://www.alveolelab.com/our-products/primo-micropatterning/
Photopatterning device for performing micropatterning, microfabrication and hydrogel polymerization.Part of PRIMO system.
Proper citation: Alveole: PRIMO photopatterning module (RRID:SCR_021941) Copy
https://biomedical-instruments.com/pdf/Narishige%20PC-10.pdf
Vertical pipette puller to create microelectrodes from borosilicate capillaries.
Proper citation: Narishige: PC 10 Puller (RRID:SCR_022057) Copy
Horizontal pipette puller to pull and polish microelectrodes from borosilicate capillaries.
Proper citation: Zeitz: DMZ Universal Electrode Puller (RRID:SCR_022056) Copy
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