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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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SP Industries Resource Report Resource Website |
SP Industries (RRID:SCR_017368) | commercial organization | Commercial organization located in Warminster, Pennsylvania, USA is manufacturer of specialty equipment, scientific glassware, laboratory and lab safety supplies, and home healthcare products serving pharmaceutical, biotechnology, educational, industrial, OEM, and commercial markets under market leading brand names. Products include pharmaceutical, scientific research, industrial, aeronautic, semiconductor and healthcare. Flagship brands are SP Scientific, SP Scienceware, and SP Ableware. | Manufacturer, commercial, organization, component, equipment, laboratory | ISNI: 0000 0004 0566 6119, grid.504161.7 | https://ror.org/00ze9yt51 | SCR_017368 | SP Industries, Inc. | 2026-08-01 12:06:02 | 0 | |||||||||
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phyloscanner Resource Report Resource Website 1+ mentions |
phyloscanner (RRID:SCR_017400) | data processing software, data analysis software, software application, software resource | Software tool for analysing pathogen genetic diversity and relationships between and within hosts at once, in windows along genome. Inferring transmission from within and between host pathogen genetic diversity. | Analysing, pathogen, genetic, diversity, relationship, host, genome | ERC Advanced Grant ; Bill & Melinda Gates Foundation ; Medical Research Council |
PMID:29186559 | Free, Available for download, Freely available | SCR_017400 | 2026-08-01 12:06:03 | 1 | |||||||||
|
Oxford Instruments Resource Report Resource Website 10+ mentions |
Oxford Instruments (RRID:SCR_017366) | material service resource, service resource, production service resource, instrument manufacture | Commercial organization located in Abingdon, United Kingdom for high technology products. Manufactures instruments for agriculture, astronomy, automotive, aerospace, bio-imaging, life science, chemical and catalysis, energy generation and storage, forensics, environmental industries, geology, metallurgy, pharmacy, photonics, polymers, quantum technology, data storage, and microelectronics. Products are divided into atom force microscopy, electron microscopy, deposition and etch tools, low temperature systems, optical imaging, nuclear magnetic resonance, MRI and CT servicing, Modular optical spectroscopy, and X-Ray. | Manufacturer, commercial, organization, component, micrsocopy, low, temperature, imaging, nuclear, magnetic, resonance, spectroscop, Xray, insturment | SCR_017366 | 2026-08-01 12:06:11 | 10 | ||||||||||||
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neuropredict Resource Report Resource Website |
neuropredict (RRID:SCR_017405) | data processing software, data analysis software, software application, software resource | Software tool for assessment of predictive power, with support for neuroimaging features. Easy machine learning and standardized predictive analysis of biomarkers. | Predictive, analysis, biomarker, neuroimaging, feature | Free, Available for download, Freely available | https://zenodo.org/record/1058993#.XW7ghShKiM8 | SCR_017405 | 2026-08-01 12:06:12 | 0 | ||||||||||
|
Neuron Phenotype Ontology Resource Report Resource Website 1+ mentions |
Neuron Phenotype Ontology (RRID:SCR_017403) | NPO | ontology, controlled vocabulary, data or information resource | An ontology for describing the complex phenotypes of neurons. | Cell, type, phenotype, neuron, ontology |
is used by: BICCN is provided by: NIFSTD |
NIMH U24 MH114827; BRAIN Initiative |
Free, Freely available | SCR_017403 | 2026-08-01 12:05:49 | 2 | ||||||||
|
iNSCOPIX: nVista Resource Report Resource Website 10+ mentions |
iNSCOPIX: nVista (RRID:SCR_017407) | instrument resource | Miniature microscope for imaging calcium activity in neural circuits by Inscopix, Inc. | Minature, microscope, imaging, calcium, activity, neural, circuit, Inscopix, Inc. | PMID:26914316 | Restricted | https://support.inscopix.com/products/nVista | SCR_017407 | 2026-08-01 12:06:12 | 13 | |||||||||
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graynet Resource Report Resource Website 1+ mentions |
graynet (RRID:SCR_017406) | data analysis software, software application, software resource, network analysis software, data processing software | Software tool for subject wise networks from morphometric features and structural MRI. Single subject morphometric networks for neuroscience connectivity applications. | Subject, wise, network, morphometric, feature, structural, MRI, neuroscience, connectivity | DOI:10.21105/joss.00924 | Free, Available for download, Freely available | SCR_017406 | 2026-08-01 12:06:04 | 2 | ||||||||||
|
StatView Version 5.0 Resource Report Resource Website 100+ mentions |
StatView Version 5.0 (RRID:SCR_017411) | data processing software, data analysis software, software application, software resource | Software package for statistical analysis by SAS Institute Inc, Cary, NC. | Statistical, analysis, SAS Institute Inc, , | SCR_017411 | 2026-08-01 12:06:04 | 203 | ||||||||||||
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Zeiss: LSM 700 microscope Resource Report Resource Website 10+ mentions |
Zeiss: LSM 700 microscope (RRID:SCR_017377) | instrument resource | Laser scanning confocal microscope designed for high-quality imaging of biological and material samples. Member of the seventh generation of confocal microscopes from Carl Zeiss. Point scanning confocal microscope., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | Point, scanning, confocal, microscope, Zeiss | THIS RESOURCE IS NO LONGER IN SERVICE | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_017377.pdf | Model_Number_LSM_700 | https://medicine.ecu.edu/core-imaging/wp-content/pv-uploads/sites/288/2019/10/lsm-700-quick-guide.pdf | https://applications.zeiss.com/C125792900358A3F/0/3B0ABFD289A23BD3C12579060047F817/$FILE/60-1-0022_e_LSM700.pdf | SCR_017377 | LSM 700 Laser Scanning Microscope | 2026-08-01 12:06:03 | 28 | ||||||
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Mass spectrometry imaging workbench Resource Report Resource Website 50+ mentions |
Mass spectrometry imaging workbench (RRID:SCR_017410) | data processing software, data analysis software, software application, software resource | Software tool for analysis of mass spectrometry imaging data implemented in Galaxy framework. Provides options to analyze mass spectrometry imaging data in imzML file format, including quality control, visualization, preprocessing, statistical analysis, image co-registration and feature identification.Galaxy docker container for mass spectrometry imaging. | Analysis, mass, spectrometry, imaging, data, Galaxy, framework, imzML, file, quality, control, visualization, statistics, docker, container | is related to: University of Freiburg; Baden-Wurttemberg; Germany | DOI:10.1101/628719 | Free, Available for download, Freely available | https://github.com/foellmelanie/docker-galaxy-msi, https://galaxyproject.org/use/msi/ | SCR_017410 | 2026-08-01 12:05:49 | 98 | ||||||||
|
Avingtrans PLC Resource Report Resource Website |
Avingtrans PLC (RRID:SCR_017371) | topical portal, data or information resource, portal | Machine industry company located in Chatteris, Cambridgeshire, United Kingdom and engaged in provision of highly engineered components, systems and services to energy, medical and traffic. Has investment in Energy Divisions, Medical Division, and Aerospace Industries. | Investment, manufacturer, aerospace, medical, energy, industry, corporation | SCR_017371 | 2026-08-01 12:06:11 | 0 | ||||||||||||
|
Agile Microwave Technology Inc. Resource Report Resource Website |
Agile Microwave Technology Inc. (RRID:SCR_017373) | material service resource, service resource, production service resource, instrument manufacture | Manufacturer, located in Cary, North Carolina, USA, of amplifiers, RF/microwaves, and other electrical components which come in boards, modules, or systems. | Commercial, company, manufacturer, amplifier, microwave, electrical, board, modul, system | SCR_017373 | Agile Mwt | 2026-08-01 12:06:03 | 0 | |||||||||||
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NeuroInfo Resource Report Resource Website 10+ mentions |
NeuroInfo (RRID:SCR_017346) | image analysis software, data visualization software, 3d visualization software, image reconstruction software, software application, software resource, data processing software | Software for automatic identification and delineation of brain regions within experimental mouse brain sections. NeuroInfo registers serial section images of any orientation to Allen Mouse Brain Atlas, corrects for distortion due to histological processing, delineates anatomies in experimental section, and detects and reports on cell number within selected anatomies. | Allen Brain Atlas, Brain, mouse, histology, delineation, mbfbioscience | is related to: Allen Institute for Brain Science | DOI:10.1002/cne.24635 | Restricted | SCR_017346 | 2026-08-01 12:06:02 | 34 | |||||||||
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ape Resource Report Resource Website 10+ mentions |
ape (RRID:SCR_017343) | data processing software, data analysis software, software application, software resource | Software R package for analysis of phylogenetics and evolution. Environment for modern phylogenetics and evolutionary analyses in R. | analysis, phylogenetics, evolution, bio.tools |
is listed by: bio.tools is listed by: Debian is related to: CRAN |
PMID:30016406 PMID:14734327 PMID:22495750 |
Free, Available for download, Freely available | biotools:ape | https://cran.r-project.org/web/packages/ape/ape.pdf, http://ape-package.ird.fr/, https://bio.tools/ape | SCR_017343 | ape 3.0, ape 5.0, Analysis of Phylogenetics and Evolution | 2026-08-01 12:06:11 | 42 | ||||||
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Connectome Computation System Resource Report Resource Website 10+ mentions |
Connectome Computation System (RRID:SCR_017342) | CCS | data processing software, data analysis software, software application, software resource | Software tool for multimodal human brain imaging data analysis. Computational pipeline for discovery science of human brain connectomes at macroscale with multimodal magnetic resonance imaging technologies. | Multimodal, human, brain, imaging, data, analysis, connectome, magnetic, resonance | DOI:10.1007/s11434-014-0698-3 | Free, Available for download, Freely available | SCR_017342 | 2026-08-01 12:06:01 | 15 | |||||||||
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Horos Resource Report Resource Website 10+ mentions |
Horos (RRID:SCR_017340) | data visualization software, software application, data processing software, software resource | Software tool as open source medical image viewer. Enables to browse and visualize medical imaging libraries. | Medical, image, viewer, ivisualize, medical, imaging, library | Restricted | SCR_017340 | 2026-08-01 12:06:11 | 11 | |||||||||||
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miRpathDB Resource Report Resource Website 50+ mentions |
miRpathDB (RRID:SCR_017356) | data or information resource, data access protocol, database, software resource, web service | Collection of single miRNAs that regulate pathways, gene ontologies and other categories, hence complementing available miRNA target enrichment programs, tailored for miRNA sets. New dictionary on microRNAs and target pathways. Database to augment available target pathway web-servers by providing researches access to information which pathways are regulated by miRNA, which miRNAs target pathway and how specific regulations are. | Collection, miRNA, data, pathway, gene, ontology, dataset, dictionary, target, regulation, bio.tools |
is listed by: bio.tools is listed by: Debian |
Saarland University ; Germany |
PMID:27742822 | biotools:miRPathDb | https://bio.tools/miRPathDB | SCR_017356 | miRNA Pathway Dictionary Database | 2026-08-01 12:05:49 | 52 | ||||||
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fastMNN Resource Report Resource Website 1+ mentions |
fastMNN (RRID:SCR_017351) | data processing software, data analysis software, software application, software resource | Software tool to correct for batch effects in single-cell expression data using fast version of mutual nearest neighbors (MNN) method. | Correct, batch, effect, single, cell, expression, data, fast, version, mutual, nearest, neighbors | Free, Available for download, Freely available | SCR_017351 | Fast Mutual Nearest Neighbors | 2026-08-01 12:06:02 | 7 | ||||||||||
|
BPC Instruments: Biomethane Potential Test Resource Report Resource Website |
BPC Instruments: Biomethane Potential Test (RRID:SCR_017319) | BMP, BMP Test, AMPTS | instrument resource | Automatic Methane Potential Test System (AMPTS) II is analytical tool for conducting various anaerobic batch fermentation tests. This includes performing, with up to 15 test vials, biochemical methane potential (BMP) tests, anaerobic biodegradability studies, specific methanogenic activity (SMA) assays, as well as conducting residual gas potential (RGP) analyses on digested slurry. | Anaerobic digestion, waste to energy, waste management, renewable energies, biogas, biomethane, modelling, University of Johannesburg (UJ), UJ-PEETS, Quantification, characterization, analysis, AI-2 import system permease protein lsrC | has parent organization: University of Johannesburg; Johannesburg; South Africa | TIA ; DST ; WRC ; NRF ; UNESCO ; SME |
https://www.uj.ac.za/faculties/febe/peets | SCR_017319 | , Automatic Methane Potential Test System (AMPTS) II, Biomethane Potential Test System, Automatic Methane Potential Test System | 2026-08-01 12:06:00 | 0 | |||||||
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SleepTrip Resource Report Resource Website 10+ mentions |
SleepTrip (RRID:SCR_017318) | data processing software, data analysis software, software application, software resource | Software as branch of FieldTrip with added functionality for sleep analyses, like calculating sleep tables, descriptives, ploting hypnograms, detecting slow waves, sleep spindles, REMS and their cooccurrence etc., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | slow, wave, oscillation, spindle, cooccurrence, rapid, eye, movements, sleep table, hypnogram |
is related to: SpiSOP works with: FieldTrip |
THIS RESOURCE IS NO LONGER IN SERVICE | https://github.com/Frederik-D-Weber/sleeptrip | SCR_017318 | SpiSOP | 2026-08-01 12:06:10 | 14 |
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Data set from Kravitz, Owen and Kretizer's 2012 paper "Optogenetic identification of striatal projection neuron subtypes during in vivo recordings."
