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https://www.spindustries.com/

Commercial organization located in Warminster, Pennsylvania, USA is manufacturer of specialty equipment, scientific glassware, laboratory and lab safety supplies, and home healthcare products serving pharmaceutical, biotechnology, educational, industrial, OEM, and commercial markets under market leading brand names. Products include pharmaceutical, scientific research, industrial, aeronautic, semiconductor and healthcare. Flagship brands are SP Scientific, SP Scienceware, and SP Ableware.

Proper citation: SP Industries (RRID:SCR_017368) Copy   

•   Source: SciCrunch Registry

https://github.com/BDI-pathogens/phyloscanner

Software tool for analysing pathogen genetic diversity and relationships between and within hosts at once, in windows along genome. Inferring transmission from within and between host pathogen genetic diversity.

Proper citation: phyloscanner (RRID:SCR_017400) Copy   

•   Source: SciCrunch Registry

https://www.oxinst.com/

Commercial organization located in Abingdon, United Kingdom for high technology products. Manufactures instruments for agriculture, astronomy, automotive, aerospace, bio-imaging, life science, chemical and catalysis, energy generation and storage, forensics, environmental industries, geology, metallurgy, pharmacy, photonics, polymers, quantum technology, data storage, and microelectronics. Products are divided into atom force microscopy, electron microscopy, deposition and etch tools, low temperature systems, optical imaging, nuclear magnetic resonance, MRI and CT servicing, Modular optical spectroscopy, and X-Ray.

Proper citation: Oxford Instruments (RRID:SCR_017366) Copy   

•   Source: SciCrunch Registry

https://github.com/raamana/neuropredict

Software tool for assessment of predictive power, with support for neuroimaging features. Easy machine learning and standardized predictive analysis of biomarkers.

Proper citation: neuropredict (RRID:SCR_017405) Copy   

•   Source: SciCrunch Registry

https://github.com/SciCrunch/NIF-Ontology/tree/neurons/ttl

An ontology for describing the complex phenotypes of neurons.

Proper citation: Neuron Phenotype Ontology (RRID:SCR_017403) Copy   

•   Source: SciCrunch Registry

https://inscopix.com/nvista-system/

Miniature microscope for imaging calcium activity in neural circuits by Inscopix, Inc.

Proper citation: iNSCOPIX: nVista (RRID:SCR_017407) Copy   

•   Source: SciCrunch Registry

https://github.com/raamana/graynet

Software tool for subject wise networks from morphometric features and structural MRI. Single subject morphometric networks for neuroscience connectivity applications.

Proper citation: graynet (RRID:SCR_017406) Copy   

•   Source: SciCrunch Registry

https://www.liebertpub.com/doi/pdf/10.1089/15279160150518540

Software package for statistical analysis by SAS Institute Inc, Cary, NC.

Proper citation: StatView Version 5.0 (RRID:SCR_017411) Copy   

•   Source: SciCrunch Registry

https://medicine.ecu.edu/core-imaging/wp-content/pv-uploads/sites/288/2019/10/lsm-700-quick-guide.pdf

Laser scanning confocal microscope designed for high-quality imaging of biological and material samples. Member of the seventh generation of confocal microscopes from Carl Zeiss. Point scanning confocal microscope., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

Proper citation: Zeiss: LSM 700 microscope (RRID:SCR_017377) Copy   

•   Source: SciCrunch Registry

https://usegalaxy.eu

Software tool for analysis of mass spectrometry imaging data implemented in Galaxy framework. Provides options to analyze mass spectrometry imaging data in imzML file format, including quality control, visualization, preprocessing, statistical analysis, image co-registration and feature identification.Galaxy docker container for mass spectrometry imaging.

Proper citation: Mass spectrometry imaging workbench (RRID:SCR_017410) Copy   

•   Source: SciCrunch Registry

https://www.avingtrans.plc.uk/

Machine industry company located in Chatteris, Cambridgeshire, United Kingdom and engaged in provision of highly engineered components, systems and services to energy, medical and traffic. Has investment in Energy Divisions, Medical Division, and Aerospace Industries.

Proper citation: Avingtrans PLC (RRID:SCR_017371) Copy   

•   Source: SciCrunch Registry

http://www.agilemwt.com/index.htm

Manufacturer, located in Cary, North Carolina, USA, of amplifiers, RF/microwaves, and other electrical components which come in boards, modules, or systems.

Proper citation: Agile Microwave Technology Inc. (RRID:SCR_017373) Copy   

•   Source: SciCrunch Registry

https://www.mbfbioscience.com/neuroinfo

Software for automatic identification and delineation of brain regions within experimental mouse brain sections. NeuroInfo registers serial section images of any orientation to Allen Mouse Brain Atlas, corrects for distortion due to histological processing, delineates anatomies in experimental section, and detects and reports on cell number within selected anatomies.

Proper citation: NeuroInfo (RRID:SCR_017346) Copy   

•   Source: SciCrunch Registry

https://CRAN.R-project.org/package=ape

Software R package for analysis of phylogenetics and evolution. Environment for modern phylogenetics and evolutionary analyses in R.

Proper citation: ape (RRID:SCR_017343) Copy   

•   Source: SciCrunch Registry

https://github.com/zuoxinian/CCS

Software tool for multimodal human brain imaging data analysis. Computational pipeline for discovery science of human brain connectomes at macroscale with multimodal magnetic resonance imaging technologies.

Proper citation: Connectome Computation System (RRID:SCR_017342) Copy   

•   Source: SciCrunch Registry

https://horosproject.org/download-horos/

Software tool as open source medical image viewer. Enables to browse and visualize medical imaging libraries.

Proper citation: Horos (RRID:SCR_017340) Copy   

•   Source: SciCrunch Registry

https://mpd.bioinf.uni-sb.de/

Collection of single miRNAs that regulate pathways, gene ontologies and other categories, hence complementing available miRNA target enrichment programs, tailored for miRNA sets. New dictionary on microRNAs and target pathways. Database to augment available target pathway web-servers by providing researches access to information which pathways are regulated by miRNA, which miRNAs target pathway and how specific regulations are.

Proper citation: miRpathDB (RRID:SCR_017356) Copy   

•   Source: SciCrunch Registry

https://rdrr.io/github/LTLA/batchelor/man/fastMNN.html

Software tool to correct for batch effects in single-cell expression data using fast version of mutual nearest neighbors (MNN) method.

Proper citation: fastMNN (RRID:SCR_017351) Copy   

•   Source: SciCrunch Registry

https://bpcinstruments.com/bpc_products/ampts3/?gad_source=5&gclid=CjwKCAiApaarBhB7EiwAYiMwqs8UHkyeggWkwFZPlUI3pLd9rJBWQ3bJ9ixnkNuq3dw4Fay4W6lwnxoC1RIQAvD_BwE

Automatic Methane Potential Test System (AMPTS) II is analytical tool for conducting various anaerobic batch fermentation tests. This includes performing, with up to 15 test vials, biochemical methane potential (BMP) tests, anaerobic biodegradability studies, specific methanogenic activity (SMA) assays, as well as conducting residual gas potential (RGP) analyses on digested slurry.

Proper citation: BPC Instruments: Biomethane Potential Test (RRID:SCR_017319) Copy   

•   Source: SciCrunch Registry

https://sleeptrip.org

Software as branch of FieldTrip with added functionality for sleep analyses, like calculating sleep tables, descriptives, ploting hypnograms, detecting slow waves, sleep spindles, REMS and their cooccurrence etc., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

Proper citation: SleepTrip (RRID:SCR_017318) Copy   

•   Source: SciCrunch Registry