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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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Rice_HxD_Recovery_Metabolomics Resource Report Resource Website 1+ mentions |
Rice_HxD_Recovery_Metabolomics (RRID:SCR_017204) | data visualization software, data analysis software, source code, software application, software resource, data processing software | Software tool as source code used in analysis of GC MS data from rice samples. Workflow for statistical analysis of GC MS data from field grown rice collected during rewatering after exposure to combined drought and heat stress. | analysis, GC-MS, data, rice, sample, statistics, workflow | Free, Available for download, Freely available | SCR_017204 | 2026-08-01 12:05:56 | 1 | |||||||||||
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BioViz3D Resource Report Resource Website 1+ mentions |
BioViz3D (RRID:SCR_017162) | image analysis software, image reconstruction software, software application, software resource, data processing software | Software for 3D reconstruction from serial slices. Used to create 3D model to analyse organs, tissues and cells, create photos and videos to help scientists in life science, biology and medicine, visualize, analyze and exploit information from serial slices and get accurate quantitative information from reconstructed 3D models. | 3D, reconstruction, serial, slice, create, model, analyze, organ, tissue, cell, photo, video, quantitative | Available for purchase | http://www.biovis3d.com/new_version_3.1.html | SCR_017162 | BioVis3D New Version 3.1 | 2026-08-01 12:06:04 | 2 | |||||||||
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University of Oxford Computational Biology Research Group Core Facility Resource Report Resource Website |
University of Oxford Computational Biology Research Group Core Facility (RRID:SCR_017166) | CBRG | data analysis service, training resource, service resource, core facility, production service resource, access service resource, analysis service resource | Core provides bioinformatics training and analysis tools. Supports bioinformatics analysis at University of Oxford. | Bioinformatics, training, | has parent organization: University of Oxford; Oxford; United Kingdom | Restricted | SCR_017166 | , Computational Biology, CBRG, Core Facility, Oxford University, Research Group | 2026-08-01 12:06:04 | 0 | ||||||||
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University of Cambridge Department of Plant Sciences Bioinformatics Core Facility Resource Report Resource Website |
University of Cambridge Department of Plant Sciences Bioinformatics Core Facility (RRID:SCR_017164) | University of Cambridge Bioinformatics Core Facility | data analysis service, service resource, core facility, production service resource, access service resource, analysis service resource | Core provides assistance in data analysis to support members of Plant Sciences. | bioinformatics, data, analysis, service | has parent organization: University of Cambridge; Cambridge; United Kingdom | SCR_017164 | Department of Plant Sciences, Core Facility, Bioinformatics, University of Cambridge | 2026-08-01 12:05:54 | 0 | |||||||||
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Marshall Scientific: PTC-150 MiniCycler Resource Report Resource Website |
Marshall Scientific: PTC-150 MiniCycler (RRID:SCR_017214) | instrument resource | Mini Thermal Cycler PCR is compact thermal scanner, catalog number PTC-150 Cycler with Hot Bonnet heated lid for oil free cycling by MJ Research. | Instrument, PCR, mini, thermal, cycler, heated, lid, oil, free, MJ Research | Available for purchase | https://www.marshallscientific.com/v//vspfiles/files/manuals/PTC150.pdf | SCR_017214 | 2026-08-01 12:06:06 | 0 | ||||||||||
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UCSF Gladstone Institutes Bioinformatics Core Facility Resource Report Resource Website |
UCSF Gladstone Institutes Bioinformatics Core Facility (RRID:SCR_017178) | UCSF Gladstone Institutes Bioinformatics Core | data analysis service, data or information resource, service resource, core facility, production service resource, software resource, training service resource, analysis service resource, access service resource | Core provides consulting services, sequencing, data analysis, and programming assistance. Used for Experimental Design and Power Analysis Consultation, RNA-seq, ChIP-seq, ATAC-seq analysis, Statistics consulting, Variant calling, Data normalization across multiple projects, General programming, Custom Figures for publication, tutorials for learning common software tools. | Bioinformatics, consulting, data, analysis, sequencing, RNA-seq, DNA-seq, ChIP-seq, ATAC-seq, statistics, variant, calling, normalization | Open | SCR_017178 | Bioinformatics Core, Gladstone Core Services, University California San Fransisco, UCSF, Gladstone Institutes | 2026-08-01 12:06:04 | 0 | |||||||||
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Bonsai Resource Report Resource Website 50+ mentions |
Bonsai (RRID:SCR_017218) | data acquisition software, software application, data processing software, software resource | Software event based framework for processing and controlling data streams. Visual language designed for making software systems that require rich and rapid interaction with external world. | Event, based, framework, processing, controlling, data, stream | European Union Seventh Framework Programme ; Bial Foundation ; Foundation for Science and Technology ; Champalimaud Foundation |
PMID:25904861 | Free, Available for download, Freely available | https://github.com/bonsai-rx/bonsai-rx.github.io | SCR_017218 | 2026-08-01 12:06:06 | 88 | ||||||||
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RNAstructure Resource Report Resource Website 10+ mentions |
RNAstructure (RRID:SCR_017216) | data access protocol, service resource, software application, production service resource, software resource, simulation software, web service, analysis service resource | Web server for RNA and DNA secondary structure prediction and analysis. Software package as RNA folding prediction program. | RNA, DNA, secondary, structure, prediction, analysis |
is listed by: SoftCite has parent organization: University of Rochester; New York; USA |
NIGMS R01 GM076485 | PMID:23620284 | Free, Freely available | SCR_017216 | 2026-08-01 12:05:56 | 42 | ||||||||
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University of Manchester Bioinformatics Core Facility Resource Report Resource Website 1+ mentions |
University of Manchester Bioinformatics Core Facility (RRID:SCR_017171) | Manchester Bioinformatics Facility | data analysis service, service resource, core facility, production service resource, access service resource, software resource, analysis service resource | Core provides assistance in integrative analysis of genomic datasets to support faculty. | bioinformatics, analysis, genomic, data, dataset | has parent organization: University of Manchester; Manchester; United Kingdom | Restricted | SCR_017171 | , Bioinformatics Facility, University of Manchester, Bioinformatics Core Facility | 2026-08-01 12:06:04 | 2 | ||||||||
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Max Planck Institiute of Immunobiology and Epigenetics; Freiburg; Germany Resource Report Resource Website |
Max Planck Institiute of Immunobiology and Epigenetics; Freiburg; Germany (RRID:SCR_017170) | topical portal, data or information resource, portal, organization | Interdisciplinary research institute that conducts basic research in modern immunobiology, developmental biology and epigenetics. | Institution, immunobiology, developmental, biology, epigenetics, research, Germany | is parent organization of: Max Planck Institiute of Immunobiology and Epigenetics Bioinformatics Core Facility | Wikidata Q1912076, GRID grid.429509.3, ISNI 0000 0004 0491 4256 | https://ror.org/058xzat49 | SCR_017170 | 2026-08-01 12:05:54 | 0 | |||||||||
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PIVOT software Resource Report Resource Website 10+ mentions |
PIVOT software (RRID:SCR_017210) | PIVOT | data processing software, data analysis software, software application, software resource | Software R package for interactive analysis and visualization of transcriptomics data. Operating systems are macOS, Linux, Windows. | Interactive, analysis, visualization, transcriptomics, data | is related to: University of Pennsylvania; Philadelphia; USA | NIMH U01 MH098953 | PMID:29304726 | Free, Available for download, Freely available | SCR_017210 | Platform for Interactive analysis and Visualization Of Transcriptomics, PIVOT, KimLabIDV | 2026-08-01 12:05:47 | 17 | ||||||
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Vall dHebron Institut de Recerca Statistics and Bioinformatics Unit Core Facility Resource Report Resource Website |
Vall dHebron Institut de Recerca Statistics and Bioinformatics Unit Core Facility (RRID:SCR_017175) | UEB | data analysis service, data or information resource, service resource, core facility, production service resource, software resource, training service resource, analysis service resource, access service resource | Core at Vall dHebron Institut de Recerca, Barcelona, Spain to provide data analysis, softwares and training programs in statistics and bioinformatics for clinical research at VHIR. | bioinformatics, next, generation, sequencing, data, analysis, DNA, RNA, omics, microarray, RTqPCR, metagenomics, methylation | Restricted | SCR_017175 | , Barcelona, Vall dHebron Institut de Recerca, Support Unit in Methodology for Biomedical Research, UEB, Statistics and Bioinformatics Unit, USMIB | 2026-08-01 12:05:47 | 0 | |||||||||
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Duke University Omics Data Analysis Core Facility Resource Report Resource Website |
Duke University Omics Data Analysis Core Facility (RRID:SCR_017174) | data analysis service, data or information resource, service resource, core facility, production service resource, access service resource, training service resource, analysis service resource | Genomic Analysis and Bioinformatics core for data analysis associated with performing complex and data intensive projects in life science research of Duke University and Duke Medical School. Provides expertise, training, data analysis in next generation sequencing, array and proteomic based technologies. | bioinformatics, data, analysis, training, expertise, next, generation, sequencing, array, proteomic, omics | has parent organization: Duke University; North Carolina; USA | Restricted | SCR_017174 | Analysis Core, Resource, Core Facility, Genomic Analysis and Bioinformatics, Duke University, Omics Data | 2026-08-01 12:06:04 | 0 | |||||||||
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BICCN Cell Registry Resource Report Resource Website 10+ mentions |
BICCN Cell Registry (RRID:SCR_017267) | data or information resource | Searchable table of datasets. Data generated from projects through BRAIN Initiative Cell Census Network. Datasets can be filtered by species, research investigator, grant number or experimental technique. Includes links to data directories at data archives and links to protocols. | data, dataset, brain, initiative, cell, registry |
is related to: BRAIN Cell Data Center is related to: BRAIN Cell Data Center has parent organization: Allen Institute for Brain Science is provided by: BICCN |
NIH | Free, Freely available, Available for download | http://www.brainimagelibrary.org/download.html, https://nemoarchive.org/resources/data-download.php | SCR_017267 | BRAIN Initiative Cell Census Network Cell Registry, BICCN Cell Registry | 2026-08-01 12:06:08 | 11 | |||||||
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brainGraph Resource Report Resource Website 10+ mentions |
brainGraph (RRID:SCR_017260) | data processing software, data analysis software, software application, software resource | Software R package for performing graph theory analyses of brain MRI data. | graph, theory, analysis, brain, MRI, data |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: CRAN |
Free, Available for download, Freely available | https://www.nitrc.org/projects/braingraph/, https://rdrr.io/cran/brainGraph/, https://www.r-pkg.org/pkg/brainGraph | SCR_017260 | brainGraph - Graph Theory Analysis of Brain MRI Data in R, brainGraph | 2026-08-01 12:05:58 | 11 | ||||||||
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Glomerular Disease Study & Trial Consortium Resource Report Resource Website 1+ mentions |
Glomerular Disease Study & Trial Consortium (RRID:SCR_017264) | GlomCon | consortium, data or information resource, portal, topical portal, disease-related portal, organization portal | Consortium to bring together clinicians, pathologists, researchers, and biotech innovators to create scalable network of stakeholders interested in helping patients with glomerular kidney disease. Makes collective expertise of its members available for discussion of individual cases, provides infrastructure for biomarker studies, enables genomic research, and facilitates clinical trials. | glomerular, kidney, disease, biomarker, genomic, clinical, trial | glomerular kidney disease | Restricted | SCR_017264 | 2026-08-01 12:05:58 | 4 | |||||||||
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SynapseLocator Resource Report Resource Website 1+ mentions |
SynapseLocator (RRID:SCR_017263) | software resource, software application, image processing software, data processing software | Software tool that combines steps of image processing, non rigid image registration, and spot localisation. Performs registration of 3D imaging data and localization of spots, active synapses in light microscopy images, in semi automatic mode with graphical user interface. | image, processing, registration, spot, localisation, 3D, data, active, synapses, microscopy |
is related to: MATLAB is related to: Fiji |
DOI:https://doi.org/10.1101/538041 | Free, Available for download, Freely available | SCR_017263 | 2026-08-01 12:06:08 | 1 | |||||||||
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University Medical Center Hamburg-Eppendorf Resource Report Resource Website 1+ mentions |
University Medical Center Hamburg-Eppendorf (RRID:SCR_017156) | UKE | university | Teaching hospital of University of Hamburg located in Eppendorf, Hamburg, Germany. | Institution, hospital, teaching, medical, center, Hamburg |
is affiliated with: University of Hamburg; Hamburg; Germany is parent organization of: University Medical Center Hamburg-Eppendorf Bioinformatics Core Facility |
Wikidata:Q316207, ISNI:0000 0001 2180 3484, grid.13648.38 | https://ror.org/01zgy1s35 | SCR_017156 | 2026-08-01 12:06:04 | 4 | ||||||||
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Whitehead Institute Bioinformatics and Research Computing Core Facility Resource Report Resource Website |
Whitehead Institute Bioinformatics and Research Computing Core Facility (RRID:SCR_017150) | BaRC | core facility, data or information resource, service resource, access service resource | Core provides consultation, training, software and educational tools in bioinformatics and graphics. | bioinformatics, consultation, training, software, graphics | has parent organization: Whitehead Institute; Cambridge; Massachusetts; United States | Restricted | SCR_017150 | Research computing, BaRC, Bioinformatics, Whitehead Institute | 2026-08-01 12:06:04 | 0 | ||||||||
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Rikshospitalet-Radiumhospitalet and University of Oslo Bioinformatics Core Facility Resource Report Resource Website |
Rikshospitalet-Radiumhospitalet and University of Oslo Bioinformatics Core Facility (RRID:SCR_017152) | BCF | data analysis service, data or information resource, database, service resource, core facility, production service resource, access service resource, analysis service resource | Core facility provides high throughput sequencing data analysis, metagenomics data analysis, proteomics data analysis, protein structure analysis, functional genomics, programming, scripting, and database or web services. | metagenomics, proteomics, protein, structure, functional, genomics, programming, scripting, data | Restricted | SCR_017152 | BCF, Core Facility, University of Oslo, Rikshospitalet-Radiumhospitalet, Bioinformatics | 2026-08-01 12:05:54 | 0 |
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Data set from Kravitz, Owen and Kretizer's 2012 paper "Optogenetic identification of striatal projection neuron subtypes during in vivo recordings."
