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https://www.modelorg.com/

Supplier of mice for research purposes. Provides technical services, model organisms, gene editing and decoding.

Proper citation: Shanghai Model Organisms Center (RRID:SCR_016407) Copy   

•   Source: SciCrunch Registry

http://www.nrcmm.cn/

Supplier of mice for research purposes.

Proper citation: National Resource Center for Mutant Mice (RRID:SCR_016406) Copy   

•   Source: SciCrunch Registry

https://www.taconic.com/

Supplier of mice for research purposes.

Proper citation: Taconic Biosciences (RRID:SCR_016410) Copy   

•   Source: SciCrunch Registry

https://bitbucket.org/mugqic/genpipes/src/master/

Software for genomics and bioinformatics analysis. GenPipes includes several python pipelines that cover many genomics applications, such as RNASeq, ChIPSeq, DNASeq, WGBS, HiC, Metagenomics, PacBio assembly, etc.

Proper citation: GenPipes (RRID:SCR_016376) Copy   

•   Source: SciCrunch Registry

https://www.genomics.agilent.com/article.jsp?pageId=2100

Software that performs data analysis algorithms for QPCR data. The software is included with the purchase of the Agilent MxPro QPCR System., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

Proper citation: MxPro QPCR (RRID:SCR_016375) Copy   

•   Source: SciCrunch Registry

http://bioconductor.org/packages/release/bioc/html/MetaCyto.html

Software tool for automated meta-analysis of mass and flow cytometry data. Provides functions for preprocessing, automated gating and meta-analysis of cytometry data and collection of cytometry data from the ImmPort database.

Proper citation: MetaCyto (RRID:SCR_016415) Copy   

•   Source: SciCrunch Registry

http://www.xenopus.com/

Supplier of Frogs and Tadpoles for the scientific community.

Proper citation: Xenopus Express (RRID:SCR_016373) Copy   

•   Source: SciCrunch Registry

http://www.monicahealthcare.com/products/labour-and-delivery/monica-novii-wireless-patch-system

A peel and stick in-room ambulatory fetal monitoring solution by Monica Healthcare Ltd. Measures fetal heart rate (FHR), maternal heart rate (MHR) and uterine activity (UA).

Proper citation: Monica monitor (RRID:SCR_016416) Copy   

•   Source: SciCrunch Registry

http://www.cycif.org/

Web page for cyclic immunofluorescence. It lists several downloadable data and software pertaining to cyclic immunofluorescence.

Proper citation: CycIF.org (RRID:SCR_016267) Copy   

•   Source: SciCrunch Registry

http://www.nitrc.org/projects/vdb/

Virtual resource for neuroscience.

Proper citation: Virtual Digital Brain (RRID:SCR_016265) Copy   

•   Source: SciCrunch Registry

https://metadatacenter.org

Develops information technologies that make authoring complete metadata more manageable. Its products aim to facilitate using the metadata in further research.Center to improve metadata and its use throughout biomedical sciences. Develops information technologies that make authoring complete metadata more manageable through better interfaces, terminology, metadata practices, and analytics. Optimizes metadata pathway from provider to end user. Provides way for funders to specify what metadata they want to collect as part of research life cycle.

Proper citation: Center for Expanded Data Annotation and Retrieval (RRID:SCR_016269) Copy   

•   Source: SciCrunch Registry

https://www.phc.ox.ac.uk/research/technology-outputs/easygv

Software for calculating different measures of glycaemic variability (GV). It analyzes continuous glucose monitoring data using a simple interface.

Proper citation: easyGV (RRID:SCR_016260) Copy   

•   Source: SciCrunch Registry

https://www.illumina.com/systems/sequencing-platforms/miseqdx.html

MiSeqDx System is FDA-regulated, CE-IVD-marked, NGS platform for in vitro diagnostic (IVD) testing. System offers both diagnostic and research modes.

Proper citation: Illumina: MiSeqDx System (RRID:SCR_016380) Copy   

•   Source: SciCrunch Registry

https://www.illumina.com/systems/sequencing-platforms/hiseq-x.html

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on November 15,2023. Sequencer for whole-genome sequencing. System consists of HiSeq X ultra-high-throughput instruments that deliver over 18,000 human genomes per year.

Proper citation: Illumina: HiSeq X (RRID:SCR_016385) Copy   

•   Source: SciCrunch Registry

https://support.illumina.com/sequencing/sequencing_instruments/hiseq_2500.html

High-throughput sequencing system. High-quality data using proven Illumina SBS chemistry has made it the instrument of choice for major genome centers and research institutions throughout the world.HiSeq 2500 System has been discontinued. Illumina will support the instrument and intends to supply the reagents through February 28, 2023.

Proper citation: Illumina: HiSeq 2500 System (RRID:SCR_016383) Copy   

•   Source: SciCrunch Registry

https://github.com/MRCIEU/PhenoSpD

Software toolkit for phenotypic correlation estimation and multiple testing correction (Spectral Decomposition, SpD) for human phenome using genome-wide association study (GWAS) summary statistics. It is a command line R based tool.

Proper citation: PhenoSpD (RRID:SCR_016359) Copy   

•   Source: SciCrunch Registry

https://deeptools.readthedocs.io/en/develop/

Python based tools to process, visualize and analyse high-throughput sequencing data, such as ChIP-seq, RNA-seq or MNase-seq. Implemented within Galaxy framework. Used to perform complete bioinformatic workflows ranging from quality controls and normalizations of aligned reads to integrative analyses, including clustering and visualization approaches.

Proper citation: Deeptools (RRID:SCR_016366) Copy   

•   Source: SciCrunch Registry

https://github.com/sblanck/smagexp

Software toolkit for transcriptomics data meta-analysis. It integrates metaMA and metaRNAseq packages into Galaxy, carries out meta-analysis of gene expression data, handles microarray data from Gene Expression Omnibus (GEO) database, and more.

Proper citation: SMAGEXP (RRID:SCR_016360) Copy   

•   Source: SciCrunch Registry

https://www.xlstat.com/en/

Software for commercial data analysis and statistical software package for Microsoft Excel.

Proper citation: XLSTAT (RRID:SCR_016299) Copy   

•   Source: SciCrunch Registry

https://github.com/Teichlab/tracer

Software application for recovery of T cell receptor (TCR) data from single cell data. Used to reconstruct full-length, paired T cell receptor (TCR) sequences from T lymphocyte single-cell RNA sequence data. Links T cell specificity with functional response by revealing clonal relationships between cells alongside their transcriptional profiles.

Proper citation: TraCeR (RRID:SCR_016338) Copy   

•   Source: SciCrunch Registry