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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
https://www.fluidigm.com/products-services/instruments/biomark-hd
Automated, high performance PCR/qPCR system that uses microfluidics technology to process samples at nanoliter scale volumes for gene expression, genotyping, sample identification, copy number variation analysis and digital PCR. With wide range of integrated fluidic circuit (IFC) formats available, scaling from mid to high throughput on single system.
Proper citation: Standard BioTools: Biomark HD system (RRID:SCR_022658) Copy
https://us.ohaus.com/en-US/Products/Balances-Scales/Portable-Balances/CS-Series/CS200P
OHAUS CS lightweight, portable, compact balance for use in laboratory, industrial, education and home use applications. CS offers great value without sacrificing accuracy for weighing jobs of 200g to 5000g.
Proper citation: OHAUS: CS200P Portable Balance (RRID:SCR_022536) Copy
https://www.npielectronic.com/product/pdes-module/
Pneumatic drug ejection. Used to apply ionic and non-ionic substances in small amounts. Locally precise application with microJECT pipette holder with built-in valve. Also available as 19″ stand alone device.
Proper citation: NPI: Pressure Application Module (RRID:SCR_022657) Copy
Japanese national university in Toyama Prefecture established in 1949. University of Toyama has three campuses, namely Gofuku, Sugitani, and Takaoka campuses.
Proper citation: University of Toyama; Toyama; Japan (RRID:SCR_022751) Copy
https://www.ncbi.nlm.nih.gov/refseq/about/nonredundantproteins/
Non-redundant RefSeq protein records are currently provided for archaeal and bacterial RefSeq genomes, with exception of selected reference genomes, by NCBI prokaryotic genome annotation pipeline. This scope definition may change in the future to include additional RefSeq sub-kingdoms or other organism groups and some GenBank conceptual translation protein records may provide cross-links to RefSeq non-redundant proteins.
Proper citation: RefSeq non-redundant proteins (RRID:SCR_022748) Copy
https://www.artec3d.com/portable-3d-scanners/artec-eva
3D scanner for making quick, textured, and accurate 3D models of medium sized objects such as human bust, alloy wheel, or motorcycle exhaust system. Used for capturing objects of almost any kind, including objects with black and shiny surfaces.
Proper citation: Artec 3D: Eva Fast 3D scanner (RRID:SCR_022589) Copy
https://www.artec3d.com/portable-3d-scanners/artec-spider
3D scanner based on blue light technology. Precision instrument for CAD users and engineers. Used for capturing small objects or intricate details of large industrial objects in high resolution, with accuracy and brilliant color.
Proper citation: Artec 3D: Space Spider (RRID:SCR_022588) Copy
https://en.wikipedia.org/wiki/Surgisphere
American healthcare analytics company established in 2008. Originally textbook marketing company, it came under scrutiny in May 2020 after it had provided large datasets of COVID-19 patients which were subsequently found to be extremely unreliable. The questionable data was used in studies published in The Lancet and The New England Journal of Medicine in May 2020. On 15 June 2020, company website was taken offline.
Proper citation: Surgisphere (RRID:SCR_022759) Copy
https://www.licor.com/bio/odyssey-xf/
System includes Odyssey XF Imager and Empiria Studio Software for streamlined image acquisition, organization, and analysis of Western blots. Used for imaging near infrared and enhanced chemiluminescent Western blots, to detect multiple targets on same blot with two channel multiplex fluorescence, and document DNA gels.
Proper citation: LI-COR: Odyssey XF Imaging System (RRID:SCR_022510) Copy
https://www.rcon-ndt.com/products/radiography/x-ray-systems/phoenix-nanotom-s/
Nanofocus computed tomography system for applications in material science, precision injection moulding, micromechanics, electronics geology and biology. System includes nanofocus X-ray tube, precision mechanics and advanced software modules. Used for range of 3D CT applications., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.
Proper citation: GE: Phoenix Nanotom S system (RRID:SCR_022582) Copy
https://www.fishersci.com/shop/products/cryostar-nx50-cryostat-1/957130
Manual cryostat designed to accommodate needs of routine clinical laboratory by offering form fitting ergonomic design, with optional height adjustment, vacutome and cold D disinfection.
Proper citation: Epredia: CryoStar NX50 Cryostat (RRID:SCR_022732) Copy
https://www.thermofisher.com/order/catalog/product/A24811
Bentchtop Thermal Cycler for everyday PCR. Features innovative, safe heated lid and large LCD color touch screen.
Proper citation: Thermo Fisher: Applied Biosystems: SimpliAmp Thermal Cycler (RRID:SCR_023004) Copy
https://www.internationalbrainlab.com/data
Data portal hosting access to behavioral data sets generated by International Brain Laboratory aiming to understand brain functions underlying decision making. Datasets are acquired in neuroscience laboratories performing experimental work. In each of these laboratories, mice are first trained in IBL decision making task following standardized training pipeline.
Proper citation: International Brain Laboratory Data (RRID:SCR_022946) Copy
https://www.keyence.co.jp/products/microscope/fluorescence-microscope/bz-9000/models/bz-9000/
Microscope system performs fluorescence, bright-field and phase-contrast imaging on various specimen holders. The system allows users to switch between four fluorescent channels, automatically adjusting the filter and exposure time while preserving the longevity of the specimen.
Proper citation: BZ 9000 Fluorescence Microscope (RRID:SCR_015486) Copy
http://www.neurocaregroup.com/dc-stimulator-neuroconn.html
Device for administering transcranial electrical stimulation. It has applications in cranial electrotherapy that provides a weak direct current for non-invasive Interventional Neurophysiology.
Proper citation: Neurocare: Neuroconn DC-Stimulator Plus (RRID:SCR_015520) Copy
Commercial organization which supplies products for bioseparation and cell line management.
Proper citation: Spectrum Labs (RRID:SCR_015488) Copy
http://mbm.cs.uga.edu/mouse/transcriptome_architecture/
Image collection of transcriptome architecture of adult mouse brain revealed by sparse coding of genome-wide in situ hybridization images.
Proper citation: Transcriptome architecture of adult mouse brain (RRID:SCR_015483) Copy
https://www.bsc.es/marenostrum/marenostrum
Operating software for a supercomputer in Spain. The software is maintained and updated by the Centro Nacional de Supercomputación (Barcelona Supercomputing Center) and is used for research projects on climate change, gravitational waves, a vaccination against AIDS, new radiation treatments to fight cancer, and other subjects.
Proper citation: MareNostrum (RRID:SCR_015737) Copy
http://amp.pharm.mssm.edu/archs4/
ARCHS4 provides access to gene counts from HiSeq 2000 and HiSeq 2500 platforms for human and mouse experiments from GEO and SRA. The website enables downloading of the data in H5 format for programmatic access as well as a 3-dimensional view of the sample and gene spaces. Search features allow browsing of the data by meta data annotation, ability to submit your own up and down gene sets, and explore matching samples enriched for annotated gene sets. Selected sample sets can be downloaded into a tab separated text file through auto-generated R scripts for further analysis. Reads are aligned with Kallisto using a custom cloud computing platform. Human samples are aligned against the GRCh38 human reference genome, and mouse samples against the GRCm38 mouse reference genome.
Proper citation: ARCHS4 (RRID:SCR_015683) Copy
http://software.broadinstitute.org/cancer/software/genepattern/modules/docs/Cuffmerge/3
The main purpose of Cufflinks.cuffmerge is to merge together several Cufflinks assemblies, making it easier to produce an assembly GTF file suitable for use with Cufflinks.cuffdiff. Cufflinks.cuffmerge also runs Cuffcompare in the background and automatically filters out transcribed fragments (transfrags) that are likely to be artifacts. Trapnell C, Hendrickson D,Sauvageau S, Goff L, Rinn JL, Pachter L. Differential analysis of gene regulation at transcript resolution with RNA-seq. Nature Biotechnology. 2013;31:46-53.
Proper citation: Cuffmerge (RRID:SCR_015688) Copy
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