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URL: http://autosome.ru/ChIPMunk/
Proper Citation: ChIPMunk (RRID:SCR_001191)
Description: DNA motif discovery software adapted for ChIP-Seq data. It is an iterative algorithm that combines greedy optimization with bootstrapping and uses coverage profiles as motif positional preferences. It does not require truncation of long DNA segments and it is practical for processing up to tens of thousands of data sequences
Abbreviations: ChIPMunk
Resource Type: software resource
Defining Citation: PMID:20736340
Keywords: chip-seq, java, binding, motif, dna, bio.tools
Funding: Russian Federal Agency for Science and Innovation State Contract 02.531.11.9003; Russian Federal Agency for Science and Innovation State Contract 02.740.11.5008; Russian Fund for Basic Research Project 10-04-92663
Availability: Free, Available for download, Freely available
Resource Name: ChIPMunk
Resource ID: SCR_001191
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
Data set from Kravitz, Owen and Kretizer's 2012 paper "Optogenetic identification of striatal projection neuron subtypes during in vivo recordings."
