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URL: https://github.com/Taiji-pipeline/Taiji
Proper Citation: Taiji (RRID:SCR_028464)
Description: Software integrative analysis pipeline for analyzing bulk/single-cell ATAC-seq and RNA-seq data. Integrative multi-omics data analysis framework. It can be used as a standalone pipeline to analyze ATAC-seq, RNA-seq, single cell ATAC-seq or Drop-seq data. Used to integrate diverse datasets and use these information to construct regulatory network and identify candidate driver genes.
Resource Type: source code, software resource, software toolkit
Defining Citation: PMID:30944857
Keywords: integrative analysis, single-cell ATAC-seq data, RNA-seq data, identify driver transcription factors, construct regulatory network, identify candidate driver genes,
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Source: SciCrunch Registry
Data set from Kravitz, Owen and Kretizer's 2012 paper "Optogenetic identification of striatal projection neuron subtypes during in vivo recordings."
