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URL: http://hibberdlab.com/transrate/
Proper Citation: TransRate (RRID:SCR_017034)
Description: Open source software tool for de novo transcriptome assembly reference free quality analysis. Used to examine assembly in detail and compare it to sequencing reads, reporting quality scores for contigs and assemblies to allow to choose between assemblers and parameters, filter out bad contigs from an assembly, and help decide when to stop trying to improve assembly.
Resource Type: data analysis software, data processing software, software application, software resource
Defining Citation: PMID:27252236
Keywords: de novo, transcriptome, assembly, reference, free, quality, analysis, sequencing, read, contig, parameter
Funding: BBSRC ; Bill & Melinda Gates Foundation ; European Union Horizon 2020 research and innovation program ; Millennium Seed Bank ; Royal Society University Research
Availability: Free, Available for download, Freely available
Resource Name: TransRate
Resource ID: SCR_017034
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
Data set from Kravitz, Owen and Kretizer's 2012 paper "Optogenetic identification of striatal projection neuron subtypes during in vivo recordings."
