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URL: http://www.cbs.dtu.dk/biotools/sequenza/
Proper Citation: Sequenza (RRID:SCR_016662)
Description: Software package for copy number estimation from tumor genome sequencing data.Tools to analyze genomic sequencing data from paired normal-tumor samples, including cellularity and ploidy estimation; mutation and copy number (allele-specific and total copy number) detection, quantification and visualization.
Resource Type: data analysis software, data processing software, data visualization software, software application, software resource
Defining Citation: PMID:25319062
Keywords: estimate, copy, number, tumor, genome, sequencing, data, cellularity, ploidy, alteration, cancer, mutation, detection, quantification, visualization
Funding: Breast Cancer Research Foundation ; Danish Council for Independent Research ; European Commission 7th Framework Programme
Resource Name: Sequenza
Resource ID: SCR_016662
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
Data set from Kravitz, Owen and Kretizer's 2012 paper "Optogenetic identification of striatal projection neuron subtypes during in vivo recordings."
