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URL: http://bioinf.wehi.edu.au/socrates/
Proper Citation: Socrates (RRID:SCR_006411)
Description: Software for detecting genomic rearrangements in tumors that utilizes only split-read data. It features single nucleotide resolution, high sensitivity, and high specificity in simulated data. It takes advantage of parallelism for efficient use of resources.
Abbreviations: Socrates
Synonyms: Socrates: Identification of genomic rearrangements in tumour genomes by re-aligning soft clipped reads, SOft Clip re-alignment To idEntify Structural variants, Socrates - SOft Clip re-alignment To idEntify Structural variants
Resource Type: software resource
Defining Citation: PMID:24389656
Keywords: genomic rearrangement
Related Condition: Tumor, Cancer
Availability: GNU General Public License, v3, Socrates makes use of external libraries that are licensed under, Apache License, v2, MIT License, Acknowledgement requested
Resource Name: Socrates
Resource ID: SCR_006411
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Walter and Eliza Hall Institute of Medical Research; Victoria; Australia |
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
Data set from Kravitz, Owen and Kretizer's 2012 paper "Optogenetic identification of striatal projection neuron subtypes during in vivo recordings."
