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URL: http://sourceforge.net/projects/hadoop-bam/
Proper Citation: Hadoop-BAM (RRID:SCR_005516)
Description: A Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework with the Picard SAM JDK, and command line tools similar to SAMtools. The file formats currently supported are BAM, SAM, FASTQ, FASTA, QSEQ, BCF, and VCF.
Abbreviations: Hadoop-BAM
Resource Type: software library, software resource, software toolkit
Defining Citation: PMID:22302568
Keywords: mapreduce/hadoop, java, next generation sequencing data, cloud
Availability: MIT License
Resource Name: Hadoop-BAM
Resource ID: SCR_005516
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
Data set from Kravitz, Owen and Kretizer's 2012 paper "Optogenetic identification of striatal projection neuron subtypes during in vivo recordings."
