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PANDIT : Protein and Associated Nucleotide Domains with Inferred Trees (RRID:SCR_003321)Copy Citation Copied
URL: http://www.ebi.ac.uk/goldman-srv/pandit
Proper Citation: PANDIT : Protein and Associated Nucleotide Domains with Inferred Trees (RRID:SCR_003321)
Description: PANDIT is a collection of multiple sequence alignments and phylogenetic trees covering many common protein domains. It contains: * the seed protein sequence alignments from the Pfam-A (curated families) database (version 17.0) * nucleotide sequence alignments derived from sequences available for the above and using the protein alignments as "templates"; * protein sequence alignments restricted to the family members for which nucleotide sequences are available * inferred phylogenetic trees for each alignment The data in PANDIT and the dataset's development have been frozen owing to a lack of funding support. The existing data, version 17.0 corresponding to Pfam 17.0, remain stable and, we hope, useful. The entire database is also available for download as a flatfile from this website.
Abbreviations: PANDIT
Synonyms: Protein and Associated Nucleotide Domains with Inferred Trees
Resource Type: data or information resource, database
Defining Citation: PMID:16381879, PMID:12912837
Keywords: gold standard, database, protein, associated nucleotide domain
Funding: Wellcome Trust
Availability: Free, Available for download, Freely available
Resource Name: PANDIT : Protein and Associated Nucleotide Domains with Inferred Trees
Resource ID: SCR_003321
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
Data set from Kravitz, Owen and Kretizer's 2012 paper "Optogenetic identification of striatal projection neuron subtypes during in vivo recordings."
