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URL: http://www.tongji.edu.cn/~zhanglab/DiNuP/
Proper Citation: DiNuP (RRID:SCR_003046)
Description: Software that compares the nucleosome profiles generated by high-throughput sequencing between different conditions. It provides a statistical p-value for each identified RDNP based on the difference of read distributions. DiNuP also empirically estimates the FDR as a cutoff when two samples have different sequencing depths and differentiate reliable RDNPs from the background noise.
Synonyms: DiNuP - A Systematic Approach to Identify Regions of Differential Nucleosome Positioning
Resource Type: data analysis software, data processing software, software application, software resource
Defining Citation: PMID:22668788
Keywords: nucleosome profile, regions of differential nucleosome positioning
Availability: Free, Freely available
Resource Name: DiNuP
Resource ID: SCR_003046
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
Data set from Kravitz, Owen and Kretizer's 2012 paper "Optogenetic identification of striatal projection neuron subtypes during in vivo recordings."
