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URL: http://www.broadinstitute.org/genome_bio/siphy/
Proper Citation: SiPhy (RRID:SCR_000564)
Description: Software that implements rigorous statistical tests to detect bases under selection from a multiple alignment data. It takes full advantage of deeply sequenced phylogenies to estimate both unlikely substitution patterns as well as slowdowns or accelerations in mutation rates. It can be applied as an Hidden Markov Model (HMM), in sliding windows, or to specific regions.
Abbreviations: SiPhy
Resource Type: sequence analysis resource
Defining Citation: PMID:19478016
Keywords: java, mutation, phylogeny, substitution pattern, mutation rate
Funding: NHGRI ; NSF
Availability: Free, Available for download, Freely available,
Resource Name: SiPhy
Resource ID: SCR_000564
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
Data set from Kravitz, Owen and Kretizer's 2012 paper "Optogenetic identification of striatal projection neuron subtypes during in vivo recordings."
