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Database to store, annotate, view, analyze and share microarray data. It provides registered users access to their own data, provides users access to public data, and tools with which to analyze those data, to any public user anywhere in the world. The GenePattern software package has been incorporated directly into SMD, providing access to many new analysis tools, as well as a plug-in architecture that allows users to directly integrate and share additional tools through SMD. This extension is available with the SMD source code that is fully and freely available to others under an Open Source license, enabling other groups to create a local installation of SMD with an enriched data analysis capability. SMD search options allow the user to Search By Experiments, Search By Datasets, or Search By Gene Names. Web services are provided using common standards, such as Simple Object Access Protocol (SOAP). This enables both local and remote researchers to connect to an installation of the database and retrieve data using pre-defined methods, without needing to resort to use of a web browser.

URL: http://smd.princeton.edu/

Resource ID: nlx_94141     Resource Type: Resource     Version: Latest Version


data set, microarray, gene, image, gene expression, adenovirus disease, apoptosis, leukemia, source code, web service


org-id: smd_stanford Access: Open/Closed
Start date: 2011
Type: Disciplinary
(info provided by re3data.org)

Additional Resource Types

database, data repository, data analysis service


Public, Open-source license, The community can contribute to this resource, Acknowledgement requested

Alternate IDs





Stanford Microarray Database

Parent Organization



Resource PubMed IDs

PMID: 12930545, PMID: 15186489, PMID: 16151515, PMID: 20098702, PMID: 20585577, PMID: 22163293, PMID: 24895587, PMID: 24992939

Funding Information

NHGRI, NCI, Howard Hughes Medical Institute, Stanford University School of Medicine; California; USA, R01 HG003469

Curation Status


Listed By

3DVC, re3data.org, OMICtools

Old URLs

http://genome-www.stanford.edu/microarray/, http://smd.stanford.edu/

Resource Status

Last checked up;

Original Submitter


Version Status


Submitted On

12:00am July 19, 2011

Originated From


Changes from Previous Version

First Version

Version 1

Created 4 years ago by Anonymous