X
Forgot Password

If you have forgotten your password you can enter your email here and get a temporary password sent to your email.

Rice Genome Annotation

Database and resource that provides sequence and annotation data for the rice genome. This website provides genome sequence from the Nipponbare subspecies of rice and annotation of the 12 rice chromosomes. All structural and functional annotation is viewable through our Rice Genome Browser which currently supports 75 tracks of annotation. Enhanced data access is available through web interfaces, FTP downloads and a Data Extractor tool developed in order to support discrete dataset downloads. Rice is a model species for the monocotyledonous plants and the cereals which are the greatest source of food for the world's population. While rice genome sequence is available through multiple sequencing projects, high quality, uniform annotation is required in order for genome sequence data to be fully utilized by researchers. The existence of a common gene set and uniform annotation allows researchers within the rice community to work from a common resource so that their results can be more easily interpreted by other scientists. The objective of this project has always been to provide high quality annotation for the rice genome. They generated, refined and updated gene models for the estimated 40,000-60,000 total rice genes, provided standardized annotation for each model, linked each model to functional annotation including expression data, gene ontologies, and tagged lines. They have provided a resource to extend the annotation of the rice genome to other plant species by providing comparative alignments to other plant species. Analysis/Tools are available including: BLAST, Locus Name Search, Functional Term Search, Protein Domain Search, Anatomy Expression Viewer, Highly Expressed Genes

URL: http://rice.plantbiology.msu.edu/

Resource ID: nif-0000-31459     Resource Type: Resource     Version: Latest Version

Keywords

rice, oryza sativa, maize, corn, zea mays, wheat, triticum aestivum, gene, genome, annotation

Additional Resource Types

database, data analysis service

Availability

Acknowledgement requested

Old URLs

http://rice.plantbiology.msu.edu/pseudomolecules/info.shtml

Species

rice

Abbreviation

Osa1

Synonyms

Rice Genome Annotation Project, MSU Rice Genome Annotation Project Database and Resource

Parent Organization

Supercategory

Resource

Resource PubMed IDs

PMID: 19171067, PMID: 19334756, PMID: 19650916, PMID: 19707806, PMID: 19710914, PMID: 19811687, PMID: 19812064, PMID: 19843335, PMID: 19884168, PMID: 19900291, PMID: 19936048, PMID: 20072620, PMID: 20072620, PMID: 20152032, PMID: 20174657, PMID: 20208064, PMID: 20214804, PMID: 20236552, PMID: 20333196, PMID: 20419097, PMID: 20419097, PMID: 20429951, PMID: 20478072, PMID: 20487558, PMID: 20487558, PMID: 20487558, PMID: 20507561, PMID: 20520727, PMID: 20520764, PMID: 20525253, PMID: 20591144, PMID: 20630103, PMID: 20634950, PMID: 20682074, PMID: 20864479, PMID: 20937104, PMID: 20946606, PMID: 21076812, PMID: 21087465, PMID: 21087491, PMID: 21124849, PMID: 21155825, PMID: 21169340, PMID: 21171996, PMID: 21186175, PMID: 21266036, PMID: 21384112, PMID: 21385389, PMID: 21407816, PMID: 21486466, PMID: 21510855, PMID: 21554676, PMID: 21559273, PMID: 21603624, PMID: 21637817, PMID: 21695282, PMID: 21713003, PMID: 21713003, PMID: 21731498, PMID: 21731498, PMID: 21795261, PMID: 21795261, PMID: 21799793, PMID: 21799793, PMID: 21814458, PMID: 21829504, PMID: 21853042, PMID: 21867507, PMID: 21917144, PMID: 21957990, PMID: 21965557, PMID: 21965557, PMID: 21965557, PMID: 21984902, PMID: 21984902, PMID: 22028702, PMID: 22048639, PMID: 22132208, PMID: 22136218, PMID: 22140509, PMID: 22164235, PMID: 22164235, PMID: 22215967, PMID: 22243810, PMID: 22250003, PMID: 22252370, PMID: 22328922, PMID: 22334568, PMID: 22345424, PMID: 22347394, PMID: 22348040, PMID: 22359569, PMID: 22359654, PMID: 22363522, PMID: 22363522, PMID: 22363522, PMID: 22363552, PMID: 22434843, PMID: 22457828, PMID: 22474413, PMID: 22500165, PMID: 22511929, PMID: 22518114, PMID: 22523544, PMID: 22559868, PMID: 22616023, PMID: 22639654, PMID: 22645571, PMID: 22761959, PMID: 22815731, PMID: 22843621, PMID: 22848641, PMID: 22870386, PMID: 22905132, PMID: 22924025, PMID: 22933233, PMID: 22937009, PMID: 22937009, PMID: 23028921, PMID: 23043463, PMID: 23050791, PMID: 23061018, PMID: 23069129, PMID: 23077584, PMID: 23077584, PMID: 23103471, PMID: 23105930, PMID: 23110079, PMID: 23118960, PMID: 23118960, PMID: 23122232, PMID: 23133603, PMID: 23133603, PMID: 23145152, PMID: 23166615, PMID: 23166615, PMID: 23166615, PMID: 23166615, PMID: 23166615, PMID: 23185584, PMID: 23203890, PMID: 23230445, PMID: 23285082, PMID: 23299411, PMID: 23308094, PMID: 23314752, PMID: 23381954, PMID: 23398910, PMID: 23469243, PMID: 23526955, PMID: 23527017, PMID: 23527017, PMID: 23533580, PMID: 23539454, PMID: 23544090, PMID: 23555569, PMID: 23555698, PMID: 23577102, PMID: 23581288, PMID: 23586618, PMID: 23593380, PMID: 23593380, PMID: 23621884, PMID: 23629674, PMID: 23638037, PMID: 23649897, PMID: 23651622, PMID: 23651622, PMID: 23651622, PMID: 23651622, PMID: 23656875, PMID: 23660286, PMID: 23667521, PMID: 23696832, PMID: 23696832, PMID: 23705659, PMID: 23717315, PMID: 23717315, PMID: 23717514, PMID: 23734211, PMID: 23762371, PMID: 23762371, PMID: 23777608, PMID: 23815483, PMID: 23825566, PMID: 23888108, PMID: 23915275, PMID: 23918968, PMID: 23922843, PMID: 23922980, PMID: 23923055, PMID: 23923055, PMID: 23935868, PMID: 23938102, PMID: 23951288, PMID: 23967316, PMID: 23979931, PMID: 23979931, PMID: 23986771, PMID: 23986771, PMID: 24020993, PMID: 24023693, PMID: 24023693, PMID: 24058148, PMID: 24058573, PMID: 24058573, PMID: 24058671, PMID: 24086561, PMID: 24093800, PMID: 24098411, PMID: 24098807, PMID: 24104396, PMID: 24121498, PMID: 24130698, PMID: 24136999, PMID: 24151491, PMID: 24163630, PMID: 24194592, PMID: 24223758, PMID: 24223858, PMID: 24240781, PMID: 24240810, PMID: 24265739, PMID: 24265852, PMID: 24365393, PMID: 24368504, PMID: 24386276, PMID: 24391861, PMID: 24393121, PMID: 24397480, PMID: 24398116, PMID: 24398598, PMID: 24405808, PMID: 24413664, PMID: 24474809, PMID: 24475224, PMID: 24489955, PMID: 24490620, PMID: 24492654, PMID: 24511289, PMID: 24550897, PMID: 24551849, PMID: 24577842, PMID: 24586171, PMID: 24586452, PMID: 24586963, PMID: 24594978, PMID: 24595438, PMID: 24599000, PMID: 24604734, PMID: 24604738, PMID: 24625559, PMID: 24688740, PMID: 24710821, PMID: 24723395, PMID: 24740422, PMID: 24743556, PMID: 24743650, PMID: 24752581, PMID: 24809003, PMID: 24820172, PMID: 24840062, PMID: 24860587, PMID: 24884676, PMID: 24885138, PMID: 24885215, PMID: 24885911, PMID: 24901798, PMID: 24904613, PMID: 24905454, PMID: 24905808, PMID: 24906444, PMID: 24950738, PMID: 24950957, PMID: 25016378, PMID: 25018764, PMID: 25047601, PMID: 25076839, PMID: 25109872, PMID: 25136805, PMID: 25137124, PMID: 25216177, PMID: 25237817, PMID: 25259844, PMID: 25295980, PMID: 25309566, PMID: 25343341, PMID: 25348423, PMID: 25368625, PMID: 25405621, PMID: 25407280, PMID: 25415194, PMID: 25443311, PMID: 25563494

Curation Status

curated

Listed By

OMICtools

Alternate URLs

http://rice.tigr.org

Alternate IDs

OMICS_01563

Resource Status

Last checked up;

Original Submitter

Anonymous

Version Status

Curated

Submitted On

12:00am September 21, 2010

Originated From

SciCrunch

Changes from Previous Version

First Version

Version 1

Created 5 years ago by Anonymous