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NEXTDB

Expression pattern map of the 100Mb genome of the nematode Caenorhabditis elegans through EST analysis and systematic whole mount in situ hybridization. NEXTDB is the database to integrate all information from their expression pattern project and to make the data available to the scientific community. Information available in the current version is as follows: * Map: Visual expression of the relationships among the cosmids, predicted genes and the cDNA clones. * Image: In situ hybridization images that are arranged by their developmental stages. * Sequence: Tag sequences of the cDNA clones are available. * Homology: Results of BLASTX search are available. Users of the data presented on our web pages should not publish the information without our permission and appropriate acknowledgment. Methods are available for: * In situ hybridization on whole mount embryos of C.elegans * Protocols for large scale in situ hybridization on C.elegans larvae

URL: http://nematode.lab.nig.ac.jp/

Resource ID: nlx_46406     Resource Type: Resource     Version: Latest Version

Keywords

rnai phenotype, homology, blast, fasta, chromosome map, cosmid, gene, cdna clone, genome, in situ hybridization, expressed sequence tag, developmental stage, sequence, embryonic caenorhabditis elegans, chromosome, phenotype, blastx, clone, sequence tag, yac, predicted gene, protein, development, larval caenorhabditis elegans, image collection, experimental protocol

Additional Resource Types

database, expression atlas, data analysis service

Species

caenorhabditis elegans

Resource PubMed IDs

PMID: 15693946, PMID: 17096596, PMID: 17875222, PMID: 19534797, PMID: 19619322, PMID: 19714217, PMID: 19759810, PMID: 20704745, PMID: 21868609, PMID: 22808160, PMID: 23444359, PMID: 23484030, PMID: 25060624, PMID: 25361578

Abbreviation

NextDB

Synonyms

Nematode Expression Pattern DataBase

Parent Organization

Curation Status

curated

Availability

Permission required, Acknowledgement required

Supercategory

Resource

Resource Status

Last checked up;

Original Submitter

Anonymous

Version Status

Curated

Submitted On

12:00am July 29, 2011

Originated From

SciCrunch

Changes from Previous Version

First Version

Version 1

Created 4 years ago by Anonymous