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NCBI Sequence Read Archive

Repository of raw sequencing data from the next generation of sequencing platforms including including Roche 454 GS System, Illumina Genome Analyzer, Applied Biosystems SOLiD System, Helicos Heliscope, Complete Genomics, and Pacific Biosciences SMRT. In addition to raw sequence data, SRA now stores alignment information in the form of read placements on a reference sequence. Data submissions are welcome. SRA is NIH's primary archive of high-throughput sequencing data and is part of the international partnership of archives (INSDC) at the NCBI, the European Bioinformatics Institute and the DNA Database of Japan. Data submitted to any of the three organizations are shared among them. NCBI announced that due to budget constraints, it would be discontinuing SRA but NIH has since committed interim funding for SRA in its current form until October 1, 2011. In addition, NCBI has been working with staff from other NIH Institutes and NIH grantees to develop an approach to continue archiving a widely used subset of next generation sequencing data after October 1, 2011.

URL: http://www.ncbi.nlm.nih.gov/sra

Resource ID: nlx_86174     Resource Type: Resource     Version: Latest Version

Keywords

sequence, blast, next-generation sequence, alignment, read placement, reference sequence, roche 454 gs system, illumina genome analyzer, applied biosystems solid system, helicos heliscope, complete genomics, pacific biosciences smrt, high-throughput sequencing, data analysis service, gold standard

Funding Information

NLM,

Additional Resource Types

database, data repository

Availability

Public, The community can contribute to this resource

Supercategory

Resource

Related To

Resource:The European Nucleotide Archive, Resource:DDBJ Sequence Read Archive, Resource:Monarch Initiative

Abbreviation

SRA

Parent Organization

Resource PubMed IDs

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23894273, PMID: 23922754, PMID: 23936293, PMID: 23943757, PMID: 23950735, PMID: 23951078, PMID: 23951546, PMID: 23964682, PMID: 23977007, PMID: 23981227, PMID: 23991001, PMID: 23999093, PMID: 24009133, PMID: 24009520, PMID: 24015111, PMID: 24039593, PMID: 24052743, PMID: 24058670, PMID: 24059350, PMID: 24063258, PMID: 24073262, PMID: 24083370, PMID: 24086331, PMID: 24086583, PMID: 24088728, PMID: 24116119, PMID: 24130736, PMID: 24134808, PMID: 24138407, PMID: 24147068, PMID: 24185837, PMID: 24204022, PMID: 24206787, PMID: 24228715, PMID: 24244370, PMID: 24252181, PMID: 24258023, PMID: 24259432, PMID: 24260478, PMID: 24270603, PMID: 24278487, PMID: 24279309, PMID: 24279449, PMID: 24303043, PMID: 24312269, PMID: 24320882, PMID: 24324330, PMID: 24330674, PMID: 24330725, PMID: 24334622, PMID: 24336748, PMID: 24340114, PMID: 24345742, PMID: 24349489, PMID: 24349528, PMID: 24351719, PMID: 24358144, PMID: 24358889, PMID: 24363426, PMID: 24367253, PMID: 24373411, PMID: 24373586, PMID: 24373613, PMID: 24374355, PMID: 24376723, PMID: 24383959, PMID: 24392128, PMID: 24397284, PMID: 24413664, PMID: 24419096, PMID: 24423865, PMID: 24441737, PMID: 24451270, PMID: 24451270, PMID: 24465483, PMID: 24465687, PMID: 24466258, PMID: 24489720, PMID: 24516544, PMID: 24516681, PMID: 24554240, PMID: 24555742, PMID: 24559473, PMID: 24568097, PMID: 24577842, PMID: 24586623, PMID: 24602292, PMID: 24603313, PMID: 24607237, PMID: 24612691, PMID: 24629057, PMID: 24634442, PMID: 24642880, PMID: 24661624, PMID: 24670012, PMID: 24671113, PMID: 24671769, PMID: 24676090, PMID: 24681819, PMID: 24682784, PMID: 24682812, PMID: 24684805, PMID: 24686850, PMID: 24691066, PMID: 24699249, PMID: 24709747, PMID: 24711806, PMID: 24714562, PMID: 24718369, PMID: 24742317, PMID: 24743270, PMID: 24799436, PMID: 24801594, PMID: 24801596, PMID: 24819537, PMID: 24822057, PMID: 24831256, PMID: 24831685, PMID: 24837716, PMID: 24840056, PMID: 24849659, PMID: 24867637, PMID: 24874881, PMID: 24875186, PMID: 24884371, PMID: 24885191, PMID: 24885229, PMID: 24885798, PMID: 24885873, PMID: 24886435, PMID: 24886553, PMID: 24896087, PMID: 24898122, PMID: 24898914, PMID: 24920279, PMID: 24932725, PMID: 24935935, PMID: 24936865, PMID: 24941005, PMID: 24942165, PMID: 24942841, PMID: 24952583, PMID: 24956460, PMID: 24964812, PMID: 24971637, PMID: 24984568, PMID: 24996778, PMID: 24997126, PMID: 24998381, PMID: 25003610, PMID: 25027854, PMID: 25030755, PMID: 25031660, PMID: 25045664, PMID: 25047601, PMID: 25048171, PMID: 25066034, PMID: 25068644, PMID: 25072251, PMID: 25080338, PMID: 25081569, PMID: 25099166, PMID: 25102179, PMID: 25122209, PMID: 25122458, PMID: 25142710, PMID: 25150411, PMID: 25163487, PMID: 25170020, PMID: 25180570, PMID: 25182072, PMID: 25184567, PMID: 25191746, PMID: 25198709, PMID: 25199535, PMID: 25202597, PMID: 25202642, PMID: 25213171, PMID: 25222706, PMID: 25228989, PMID: 25237051, PMID: 25238539, PMID: 25239404, PMID: 25249410, PMID: 25249442, PMID: 25249628, PMID: 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Resource Status

Last checked up;

Synonyms

Sequence Read Archive, NCBI SRA

Curation Status

curated

Listed By

OMICtools

Alternate IDs

OMICS_01031

Original Submitter

Anonymous

Version Status

Curated

Submitted On

12:00am June 10, 2011

Originated From

SciCrunch

Changes from Previous Version

First Version

Version 1

Created 4 years ago by Anonymous