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NCBI BioSample

Database containing descriptions of biological source materials used in experimental assays. Sources include: GenBank, Sequence Read Archive (SRA), Coriell, ATCC. Submissions are supported by a web-based Submission Portal that guides users through a series of forms for input of rich metadata describing their samples. As the capacity and complexity of biological data sets expands, databases face new challenges in ensuring that the information is adequately organized and described. The NCBI BioSample database is being developed to help address the challenges by providing the means by which data generators can organize and describe a broad range of sample types, and link to corresponding sets of experimental data in archival databases.

URL: http://www.ncbi.nlm.nih.gov/biosample

Resource ID: nlx_143929     Resource Type: Resource     Version: Latest Version

Keywords

dna, rna, cell, cell line, stem cell, biomaterial, gold standard

Funding Information

NLM

Listed By

OMICtools, Duke University Libraries

Alternate IDs

OMICS_01024

Supercategory

Resource

Related To

GenBank, ATCC, NCBI Sequence Read Archive, Coriell Cell Repositories

Abbreviation

BioSample

Parent Organization

Publication Link

http://nar.oxfordjournals.org/content/40/D1/D57.abstract?ijkey=0469da2e2cd8abe21201c5de9d790ce2f48a26a7&keytype2=tf_ipsecsha

Synonyms

BioSample Database, NCBI BioSample Database

Additional Resource Types

Database

Availability

The community can contribute to this resource

Related Application

Research

Original Submitter

Anonymous

Version Status

Curated

Submitted On

12:00am January 10, 2012

Originated From

SciCrunch

Changes from Previous Version

    No Changes

    Version 5

    Created 2 weeks ago by Christie Wang

    Version 4

    Created 2 weeks ago by Christie Wang

    Version 3

    Created 2 weeks ago by Christie Wang

    Version 2

    Created 2 months ago by Kristen Jensen

    Version 1

    Created 3 years ago by Anonymous

    BioProject and BioSample databases at NCBI: facilitating capture and organization of metadata.

    • Barrett T
    • Nucleic Acids Res.
    • 2012 23

    As the volume and complexity of data sets archived at NCBI grow rapidly, so does the need to gather and organize the associated metadata. Although metadata has been collected for some archival databases, previously, there was no centralized approach at NCBI for collecting this information and using it across databases. The BioProject database was recently established to facilitate organization and classification of project data submitted to NCBI, EBI and DDBJ databases. It captures descriptive information about research projects that result in high volume submissions to archival databases, ties together related data across multiple archives and serves as a central portal by which to inform users of data availability. Concomitantly, the BioSample database is being developed to capture descriptive information about the biological samples investigated in projects. BioProject and BioSample records link to corresponding data stored in archival repositories. Submissions are supported by a web-based Submission Portal that guides users through a series of forms for input of rich metadata describing their projects and samples. Together, these databases offer improved ways for users to query, locate, integrate and interpret the masses of data held in NCBI's archival repositories. The BioProject and BioSample databases are available at http://www.ncbi.nlm.nih.gov/bioproject and http://www.ncbi.nlm.nih.gov/biosample, respectively.