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NCBI BioProject

Database of biological data related to a single initiative, originating from a single organization or from a consortium. A BioProject record provides users a single place to find links to the diverse data types generated for that project. It is a searchable collection of complete and incomplete (in-progress) large-scale sequencing, assembly, annotation, and mapping projects for cellular organisms. Submissions are supported by a web-based Submission Portal. The database facilitates organization and classification of project data submitted to NCBI, EBI and DDBJ databases that captures descriptive information about research projects that result in high volume submissions to archival databases, ties together related data across multiple archives and serves as a central portal by which to inform users of data availability. BioProject records link to corresponding data stored in archival repositories. The BioProject resource is a redesigned, expanded, replacement of the NCBI Genome Project resource. The redesign adds tracking of several data elements including more precise information about a project's scope, material, and objectives. Genome Project identifiers are retained in the BioProject as the ID value for a record, and an Accession number has been added. Database content is exchanged with other members of the International Nucleotide Sequence Database Collaboration (INSDC). BioProject is accessible via FTP.

URL: http://www.ncbi.nlm.nih.gov/bioproject

Resource ID: nlx_143909     Resource Type: Resource     Version: Latest Version

Keywords

genome sequencing, sequencing, genotype, phenotype, sequence variant, epigenetic, data set, genome, assembly, annotation, mapping, cellular organism, gene mapping, gene expression, biological tag, gene rearrangement, genetic algorithm, genetic code, genetic genealogy, gold standard

Funding Information

NLM,

Curation Status

curated

Listed By

3DVC, re3data.org

Alternate URLs

http://www.ncbi.nlm.nih.gov/genomeprj

Resource PubMed IDs

PMID: 21772787, PMID: 22139929, PMID: 22144685, PMID: 23225993, PMID: 23593470, PMID: 23840927, PMID: 23936293, PMID: 24030721, PMID: 24086671, PMID: 24112474, PMID: 24140757, PMID: 24192039, PMID: 24194605, PMID: 24291769, PMID: 24450656, PMID: 24671769, PMID: 24708854, PMID: 24799432, PMID: 24994456, PMID: 24998458, PMID: 25028429, PMID: 25140675, PMID: 25188293, PMID: 25238588, PMID: 25271282, PMID: 25521762, PMID: 25553065

Related To

Resource:INSDC

Abbreviation

BioProject

Parent Organization

Old URLs

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?CMD=search&DB=genomeprj

Supercategory

Resource

Resource Status

Last checked up;

Synonyms

NCBI BioProject Database

Comment

Access: Open
Reuse: Open
Type: Disciplinary
Deposit: Open - https://submit.ncbi.nlm.nih.gov/subs/bioproject/ for more information
(info provided by re3data.org)

Additional Resource Types

database

Availability

The community can contribute to this resource

Publication Link

http://nar.oxfordjournals.org/content/40/D1/D57.abstract?ijkey=0469da2e2cd8abe21201c5de9d790ce2f48a26a7&keytype2=tf_ipsecsha

Original Submitter

Anonymous

Version Status

Curated

Submitted On

12:00am January 5, 2012

Originated From

SciCrunch

Changes from Previous Version

First Version

Version 1

Created 3 years ago by Anonymous