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Magnaporthe comparative Database

The Magnaporthe comparative genomics database provides accesses to multiple fungal genomes from the Magnaporthaceae family to facilitate the comparative analysis. As part of the Broad Fungal Genome Initiative, the Magnaporthe comparative project includes the finished M. oryzae (formerly M. grisea) genome, as well as the draft assemblies of Gaeumannomyces graminis var. tritici and M. poae. It provides users the tools to BLAST search, browse genome regions (to retrieve DNA, find clones, and graphically view sequence regions), and provides gene indexes and genome statistics. We were funded to attempt 7x sequence coverage comprising paired end reads from plasmids, Fosmids and BACs. Our strategy involves Whole Genome Shotgun (WGS) sequencing, in which sequence from the entire genome is generated and reassembled. Our specific aims are as follows: 1. Generate and assemble sequence reads yielding 7X coverage of the Magnaporthe oryzae genome through whole genome shotgun sequencing. 2. Generate and incorporate BAC and Fosmid end sequences into the genome assembly to provide a paired-end of average every 2 kb. 3. Integrate the genome sequence with existing physical and genetic map information. 4. Perform automated annotation of the sequence assembly. 5. Distribute the sequence assembly and results of our annotation and analysis through a freely accessible, public web server and by deposition of the sequence assembly in GenBank.

URL: http://www.broadinstitute.org/annotation/genome/magnaporthe_comparative/MultiHome.html

Resource ID: nif-0000-03095     Resource Type: Resource     Version: Latest Version

Keywords

genome, gene, sequencing, magnaporthe, m. grisea genome, m. oryzae

Curation Status

curated

Old URLs

http://www.broad.mit.edu/annotation/genome/magnaporthe_grisea/Home.html

Resource PubMed IDs

PMID: 23405169, PMID: 23826342, PMID: 24454828, PMID: 24727546, PMID: 25011008, PMID: 25090011

Abbreviation

Broad MGG

Synonyms

M. oryzae Database, Magnaporthe comparative genomics database

Parent Organization

Funding Information

USDA, NSF,

Additional Resource Types

database, data analysis service

Supercategory

Resource

Resource Status

Last checked up;

Original Submitter

Anonymous

Version Status

Curated

Submitted On

12:00am August 30, 2011

Originated From

SciCrunch

Changes from Previous Version

First Version

Version 1

Created 4 years ago by Anonymous