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Integrated Tumor Transcriptome Array and Clinical data Analysis

ITTACA is a database created for Integrated Tumor Transcriptome Array and Clinical data Analysis. ITTACA centralizes public datasets containing both gene expression and clinical data and currently focuses on the types of cancer that are of particular interest to the Institut Curie: breast carcinoma, bladder carcinoma, and uveal melanoma. ITTACA is developed by the Institut Curie Bioinformatics group and the Molecular Oncology group of UMR144 CNRS/Institut Curie. A web interface allows users to carry out different class comparison analyses, including comparison of expression distribution profiles, tests for differential expression, patient survival analyses, and users can define their own patient groups according to clinical data or gene expression levels. The different functionalities implemented in ITTACA are: - To test if one or more gene, of your choice, is differentially expressed between two groups of samples exhibiting distinct phenotypes (Student and Wilcoxon tests). - The detection of genes differentially expressed (Significance Analysis of Microarrays) between two groups of samples. - The creation of histograms which represent the expression level according to a clinical parameter for each sample. - The computation of Kaplan Meier survival curves for each group. ITTACA has been developed to be a useful tool for comparing personal results to the existing results in the field of transcriptome studies with microarrays.

URL: http://bioinfo-out.curie.fr/ittaca/

Resource ID: nif-0000-21227     Resource Type: Resource     Version: Latest Version

Keywords

expression, gene, analysis, array, bioinformatics, bladder, breast, cancer, carcinoma, clinical, integrated, melanoma, microarray, molecular, oncology, patient, phenotype, survival, transcriptome, tumor, uveal

Additional Resource Types

database

Resource PubMed IDs

PMID: 19458762, PMID: 21599997

Abbreviation

ITTACA

Synonyms

ITTACA

Parent Organization

Curation Status

uncurated

Supercategory

Resource

Resource Status

Last checked up;

Original Submitter

Anonymous

Version Status

Curated

Submitted On

12:00am September 21, 2010

Originated From

SciCrunch

Changes from Previous Version

First Version

Version 1

Created 5 years ago by Anonymous