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Honey Bee Brain EST Project

A database integrating data from the bee brain EST sequencing project with data from sequencing and gene research projects from other organisms, primarily the fruit fly Drosophila melanogaster. The goal of Bee-ESTdb is to provide updated information on the genes of the honey bee, currently using annotation primarily from flies to suggest cellular roles, biological functions, and evolutionary relationships. The site allows searches by sequence ID, EST annotations, Gene Ontology terms, Contig ID and using BLAST. Very nice resource for those interested in comparative genomics of brain. A normalized unidirectional cDNA library was made in the laboratory of Prof. Bento Soares, University of Iowa. The library was subsequently subtracted. Over 20,000 cDNA clones were partially sequenced from the normalized and subtracted libraries at the Keck Center, resulting in 15,311 vector-trimmed, high-quality, sequences with an average read length of 494 bp. and average base-quality of 41. These sequences were assembled into 8966 putatively unique sequences, which were tested for similarity to sequences in the public databases with a variety of BLAST searches. The Clemson University Genomics Institute is the distributor of these public domain cDNA clones. For information on how to purchase an individual clone or the entire collection, please contact www.genome.clemson.edu/orders/ or generobi (at) life.uiuc.edu.

URL: http://titan.biotec.uiuc.edu/bee/honeybee_project.htm

Resource ID: nif-0000-00118     Resource Type: Resource     Version: Latest Version

Keywords

expressed sequence tag, brain, behavior, cdna, blast, gene, annotation, microarray, gene expression, comparative genomics, cdna clone, resource:genbank

Comment

Sample type: cDNA clone,

Additional Resource Types

database, biomaterial supply resource

Availability

Free

Species

honeybee

Related To

Resource:One Mind Biospecimen Bank ListingResource:GO,

Abbreviation

Bee-ESTdb

Parent Organization

Supercategory

Resource

Resource PubMed IDs

PMID: 11864369, PMID: 17498303

Synonyms

Honeybee EST Project

Curation Status

curated

Listed By

One Mind Biospecimen Bank Listing, Biobank

Related Application

Research

Resource Status

Last checked up;

Original Submitter

Anonymous

Version Status

Curated

Submitted On

12:00am September 21, 2010

Originated From

SciCrunch

Changes from Previous Version

First Version

Version 1

Created 4 years ago by Anonymous