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GoFish

Software program, available as a Java applet online or to download, allows the user to select a subset of Gene Ontology (GO) attributes, and ranks genes according to the probability of having all those attributes.

URL: http://llama.mshri.on.ca/gofish/GoFishWelcome.html

Resource ID: nlx_149126     Resource Type: Resource     Version: Latest Version

Keywords

gene, ontology or annotation browser, java, windows, mac os x, linux, unix

Additional Resource Types

Software Resource, Source Code, Data Analysis Service

Availability

Free for academic use

Alternate IDs

OMICS_02272

Supercategory

Resource

Related To

GO

Abbreviation

GoFish

Parent Organization

Publication Link

http://bioinformatics.oxfordjournals.org/content/19/6/788.long

Funding Information

Aventis Pharmaceuticals, Howard Hughes Medical Institute, NHGRI,

Listed By

Gene Ontology Tools, OMICtools

Alternate URLs

http://llama.mshri.on.ca/Software.html

Species

saccaromyces cerevisiae, caenorhabditis elegans, drosophila melanogaster, mouse

Original Submitter

Anonymous

Version Status

Curated

Submitted On

12:00am June 29, 2012

Originated From

SciCrunch

Changes from Previous Version

    No Changes

    Version 4

    Created 2 weeks ago by Christie Wang

    Version 3

    Created 2 weeks ago by Christie Wang

    Version 2

    Created 2 weeks ago by Christie Wang

    Version 1

    Created 3 years ago by Anonymous

    GoFish finds genes with combinations of Gene Ontology attributes.

    • Berriz GF
    • Bioinformatics
    • 2003 12

    SUMMARY: GoFish is a Java application that allows users to search for gene products with particular gene ontology (GO) attributes, or combinations of attributes. GoFish ranks gene products by the degree to which they satisfy a Boolean query. Four organisms are currently supported: Saccaromyces cerevisiae, Caenorhabditis elegans, Drosophila melanogaster, and M.musculus.