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Gene Ontology Browsing Utility (GOBU)

Gene Ontology Browsing Utility (GOBU) (GOBU) is a Java-based software program for integrating biological annotation catalogs under an extendable software architecture. Users may interact with the Gene Ontology and user-defined hierarchy data of genes, and then use its plugins to (and not limited to) (1) browse the GO hierarchy with user defined data, (2) browse GO-oriented expression levels in the user data, (3) compute GO enrichment, and/or (4) customize data reporting. A set of classes and utility functions has been established so that a customized program can be made as a plugin or a command-line tool that programmically manipulate the Gene Ontology and specified user data. See the source code repository for examples. Reference Lin WD, Chen YC, Ho JM, Hsiao CD. GOBU: Toward an Integration Interface for Biological Objects. Journal of Information Science and Engineering. 2006 22(1):19-29. Platform: Windows compatible, Mac OS X compatible, Linux compatible, Unix compatible

URL: http://bc02.iis.sinica.edu.tw/gobu/manual/index.html

Resource ID: nlx_149098     Resource Type: Resource     Version: Latest Version

Keywords

annotation, gene, browser, computation, visualization, software library, statistical analysis, term enrichment, ontology or annotation browser, ontology or annotation visualization

Comment

GO data updates: not applicable (e.g. because users provide data)

Listed By

Gene Ontology Tools

Supercategory

Resource

Related To

GO

Abbreviation

GOBU

Parent Organization

Synonyms

Gene Ontology Browsing Utility

Additional Resource Types

Software Resource, Source Code

Availability

Open unspecified license - Free for academic use

Original Submitter

Anonymous

Version Status

Curated

Submitted On

12:00am June 28, 2012

Originated From

SciCrunch

Changes from Previous Version

    No Changes

    Version 4

    Created 1 week ago by Christie Wang

    Version 3

    Created 2 weeks ago by Christie Wang

    Version 2

    Created 2 weeks ago by Christie Wang

    Version 1

    Created 3 years ago by Anonymous