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Gene Interaction Extraction from the Literature

GIN-IE is a high precision system for extracting protein/gene interactions, interaction cue words, and directionality from the literature. Syntax-aware inferences about the roles of the entities are made by using the syntactic and dependency parse tree structures of the sentences. Negation and speculation are frequently occurring language phenomena that modify the factuality of the information contained in text. GIN-IE detects and distinguishes interactions that are extracted from negated or speculative sentences. GIN-IE has been integrated with the NCIBI PubMed daily update and processing pipeline. The extracted interactions are accessible through MimiWeb.

URL: http://portal.ncibi.org/gateway/gin.html

Resource ID: nif-0000-33151     Resource Type: Resource     Version: Latest Version


extract, gene, interaction, protein, sentence, structure

Related To

National Center for Integrative Biomedical Informatics



Additional Resource Types

Software Resource



Parent Organization

Original Submitter


Version Status


Submitted On

12:00am September 21, 2010

Originated From


Changes from Previous Version

  • Related To was changed
  • Parent Organization was changed
  • Abbreviation was changed

Version 4

Created 2 weeks ago by Kristen Jensen

Version 3

Created 3 weeks ago by Kristen Jensen

Version 2

Created 3 weeks ago by Christie Wang

Version 1

Created 5 years ago by Anonymous