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A component of EcoliHub, EcoliWiki is a wiki-based system for finding, editing, and adding information about E. coli K-12 and other model organism strains of E. coli. EcoliWiki is being constructed to include information about bacteriophage, plasmids, and mobile genetic elements. Information should be easily accessible and correct, and users have the right to edit any information they feel is incorrect. Most of the E. coli information was initially seeded with a subset of information from parsing EcoCyc data dumps. For phage gamma and the F plasmid, Genbank accessions were converted to GFF, which was parsed into the appropriate tables. Other sources of content include: * user additions * monthly addition of annotations from EcoCyc * structural data from the PDB * domains and motif information from InterPro * various databases including EcoGene, RegulonDB, Genbank, GenoBase, ASAP * many many scientific papers EcoliWiki participates in the RefGenome project. EcoliWiki provides REST web services as part of the EcoliHub Web Services infrastructure project.

URL: http://ecoliwiki.net/colipedia/index.php/Welcome_to_EcoliWiki

Resource ID: nlx_68806     Resource Type: Resource     Version: Latest Version


phantom gene, genome sequence, bacteriophage, escherichia coli, e. coli, prokaryotic, gene, model organism, annotation

Additional Resource Types

Wiki, Web Service





Funding Information

NIGMS, U24GM088849

Parent Organization


org-id: ecoliwiki


escherichia coli

Original Submitter


Version Status


Submitted On

12:00am July 1, 2011

Originated From


Changes from Previous Version

  • Description was changed
  • Additional Resource Types was changed

Version 2

Created 2 months ago by Christie Wang

Version 1

Created 4 years ago by Anonymous