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BioMart Project

A query-oriented data management system that can be used with any type of data and is particularly suited for providing 'data mining' like searches of complex descriptive data. BioMart comes with an 'out of the box' website that can be installed, configured and customized according to user requirements. Further access is provided by graphical and text based applications or programmatically using web services or API written in Perl and Java. BioMart has built-in support for query optimization and data federation and in addition can be configured to work as a DAS 1.5 Annotation server. The process of converting a data source into BioMart format is fully automated by the tools included in the package. Currently supported RDBMS platforms are MySQL, Oracle and Postgres.

URL: http://www.biomart.org

Resource ID: nif-0000-30184     Resource Type: Resource     Version: Latest Version

Keywords

biology, data, management, data mining, search, descriptive, graphical, application, perl, java, gold standard

Synonyms

BioMart software

Funding Information

Wellcome Trust, EMBL, European Union, FP6 Programme, government of Ontario, contract LHSG-CT-2004-512092

Additional Resource Types

software resource, web service

Availability

GNU Lesser General Public License

Supercategory

Resource

Parent Organization

Original Submitter

Anonymous

Version Status

Curated

Submitted On

12:00am December 14, 2010

Originated From

SciCrunch

Changes from Previous Version

First Version

Version 1

Created 5 years ago by Anonymous