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AgBase

A curated, open-source, web-accessible resource for functional analysis of agricultural plant and animal gene products. Our long-term goal is to serve the needs of the agricultural research communities by facilitating post-genome biology for agriculture researchers and for those researchers primarily using agricultural species as biomedical models. AgBase provides tools designed to assist with the analysis of proteomics data and tools to evaluate experimental datasets using the GO. Additional tools for sequence analysis are also provided. We use controlled vocabularies developed by the Gene Ontology (GO) Consortium to describe molecular function, biological process, and cellular component for genes and gene products in agricultural species. AgBase will also accept annotations from any interested party in the research communities. AgBase develops freely available tools for functional analysis, including tools for using GO. We appreciate any and all questions, comments, and suggestions. AgBase uses the NCBI Blast program for searches for similar sequences. And the Taxonomy Browser allows users to find the NCBI defined taxon ID for or taxon name for different organisms.

URL: http://www.agbase.msstate.edu/

Resource ID: nif-0000-02537     Resource Type: Resource     Version: Latest Version

Keywords

gene ontology, agricultural species, biological process, cellular component for genes, molecular function, protein identification, animals, plants, microbes, parasites

Additional Resource Types

database

Resource PubMed IDs

PMID: 18047723, PMID: 18528524, PMID: 19166590, PMID: 19811685, PMID: 19811692, PMID: 20574525, PMID: 20946599, PMID: 20946609, PMID: 20946613, PMID: 21718517, PMID: 21867558, PMID: 22253803, PMID: 22463732, PMID: 23116199, PMID: 23160411, PMID: 23220694, PMID: 23391302, PMID: 23409192, PMID: 23647851, PMID: 23777608, PMID: 24098759, PMID: 24586154, PMID: 24586658, PMID: 24684805, PMID: 24967839, PMID: 25049869, PMID: 25052702, PMID: 25287937, PMID: 25604012

Abbreviation

AgBase

Funding Information

Mississippi State University; Mississippi; USA, National Research Initiative of the USDA Cooperative State Research Education and Extension Service, NIGMS, MISV-329140, 07111084

Parent Organization

Curation Status

uncurated

Supercategory

Resource

Resource Status

Last checked up;

Original Submitter

Anonymous

Version Status

Curated

Submitted On

12:00am September 8, 2010

Originated From

SciCrunch

Changes from Previous Version

First Version

Version 1

Created 5 years ago by Anonymous