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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Oregon Health and Science University; Oregon; USA Resource Report Resource Website 1+ mentions |
Oregon Health and Science University; Oregon; USA (RRID:SCR_009665) | OHSU | university | As the state''s only health and research university, OHSU brings together patient care, research, education of the next generation of health care providers and scientists and community service to improve the health and well-being of all Oregonians. |
is related to: Alzheimers Disease Genetics Consortium is related to: International AMD Genetics Consortium is related to: Beta Cell Biology Consortium is related to: Clinical and Translational Science Awards Consortium is parent organization of: OHSU MRI Support Core Laboratory is parent organization of: MCML and CONV is parent organization of: Neuron Registry Annotated Corpus is parent organization of: OHSU Biolibrary is parent organization of: Sterol and Isoprenoid Research Consortium is parent organization of: CTSAconnect is parent organization of: CTSA ShareCenter is parent organization of: OHSU Layton Aging and Alzheimer's Disease Center is parent organization of: Clinical Outcomes Research Initiative is parent organization of: OHSU Investigator Support and Integration Services is parent organization of: OHSU Advanced Computing Center Core Facility is parent organization of: OHSU Advanced Imaging Research Center Core Facility is parent organization of: OHSU Advanced Light Microscopy Core Facility is parent organization of: OHSU Assisted Reproductive Technologies and Embryonic Stem Cell Laboratory is parent organization of: OHSU Bioanalytical Shared Resource Pharmacokinetics Core Facility is parent organization of: OHSU Biochemical Genetics Laboratory is parent organization of: Oregon Clinical and Translational Research Institute Biomedical Informatics Program is parent organization of: OHSU Biomedical Informatics Shared Resource is parent organization of: OHSU Clinical Cytogenetics Laboratory is parent organization of: OHSU DNA Services Core Facility is parent organization of: Oregon Health and Science University Multiscale Microscopy Core Facility is parent organization of: OHSU Electronics and Instrumentation Design Core Resource is parent organization of: OHSU Endocrine Technology Support Core Laboratory is parent organization of: OHSU Flow Cytometry and Monoclonal Antibody Shared Resource Core Facility is parent organization of: OHSU Gene Profiling Shared Resource Core Facility is parent organization of: OHSU Lipid-Atherosclerosis Laboratory is parent organization of: OHSU Histopathology Shared Resource Core Facility is parent organization of: OHSU Imaging and Morphology Support Core Laboratory is parent organization of: OHSU Immuno Electron Microscopy Core is parent organization of: OHSU Immunology Support Core Cellular Immunology Unit is parent organization of: OHSU Immunology Support Core Flow Cytometry Unit is parent organization of: OHSU In Vivo Optical Imaging Center is parent organization of: OHSU Massively Parallel Sequencing Shared Resource Core Facility is parent organization of: OHSU Methamphetamine Abuse Research Center Animal Core Component is parent organization of: OHSU Molecular and Cellular Biology Core Laboratory is parent organization of: OHSU Monoclonal Antibody Core Laboratory is parent organization of: OHSU Neuropathology Core is parent organization of: OHSU Nuclear Magnetic Resonance Core Facility is parent organization of: OHSU Proteomics Shared Resource Core Facility is parent organization of: OHSU Research Cytogenetics Core Laboratory is parent organization of: OHSU Animal Model Support Core Facility is parent organization of: Oregon Clinical and Translational Research Institute Bionutrition Unit is parent organization of: OHSU Oregon Clinical and Translational Research Center Core Facility is parent organization of: Oregon Stem Cell Center Monoclonal Antibody Core is parent organization of: OSHU Gene Microarray Shared Resource is parent organization of: Oregon Health and Science University Labs and Facilities is parent organization of: OHSU DNA Services Core Facility is parent organization of: OHSU Molecular Virology Support Core is parent organization of: Oregon Health and Science University School of Medicine; Oregon; USA is parent organization of: Zebra Finch Expression Brain Atlas is parent organization of: Oregon Brain Bank is parent organization of: Research Network in Early Experience and Brain Development is parent organization of: Eagle I is parent organization of: Oregon Health and Science University Integrated Genomics Laboratory Core Facility is parent organization of: Oregon Health and Science University Multiscale Microscopy Core Facility is parent organization of: Oregon Health and Science University Elemental Analysis Core Facility is parent organization of: Oregon Health and Science University Center for Radiochemistry Research Core Facility is parent organization of: Oregon Health and Science University Biophysics Core Facility is parent organization of: Oregon Health and Science University Small Animal Research Imaging Core Facility is parent organization of: Oregon Health and Science University Biostatistics and Design Program Core Facility is parent organization of: Oregon Health and Science University Medicinal Chemistry Core Facility is parent organization of: Oregon Health and Science University Bioinformatics and Biostatistics Core Facility is parent organization of: MONARCH Initiative is parent organization of: Oregon Health and Science University Primate Genetics Core Facility is parent organization of: OHSU Monoclonal Antibody Shared Resource Core Facility |
nlx_80843, grid.5288.7, Crossref funder ID:100006668, Wikidata:Q282097, ISNI:0000 0000 9758 5690 | https://ror.org/009avj582 | SCR_009665 | Oregon Health & Science University; Oregon; USA, Oregon Health & Science University, Oregon Health University | 2026-08-01 12:04:10 | 1 | ||||||||
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U.S. Department of Commerce Resource Report Resource Website 1+ mentions |
U.S. Department of Commerce (RRID:SCR_009859) | Commerce.gov | institution | Executive department of the federal government concerned with promoting economic growth. Among its tasks are gathering economic and demographic data for business and government decision-making, and helping to set industrial standards. | Government granting agency |
is parent organization of: NIST - National Institute of Standards and Technology is parent organization of: National Oceanic and Atmospheric Administration is parent organization of: U.S. Census Bureau |
Crossref funder ID: 100000190, grid.239119.1, ISNI: 0000 0004 0478 6426, Wikidata: Q503577, nlx_144074 | https://ror.org/04chq2495 | SCR_009859 | United States Department of Commerce | 2026-08-01 12:04:11 | 2 | |||||||
|
U.S. Geological Survey Resource Report Resource Website 100+ mentions |
U.S. Geological Survey (RRID:SCR_010168) | USGS | institution | Scientific agency of the United States government. The scientists of the USGS study the landscape of the United States, its natural resources, and the natural hazards that threaten it. The organization's work spans the disciplines of biology, geography, geology, and hydrology. | Government granting agency | nlx_157935, grid.2865.9, ISNI: 121546924, Crossref funder ID: 100000203, Wikidata: Q193755 | https://ror.org/035a68863 | SCR_010168 | United States Geological Survey | 2026-08-01 12:04:05 | 342 | ||||||||
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AllSeq Resource Report Resource Website |
AllSeq (RRID:SCR_010053) | AllSeq | service resource | Free online tools to find the best Sequencing Service provider for your project. | is listed by: OMICtools | Free | OMICS_01726 | SCR_010053 | 2026-08-01 12:04:11 | 0 | |||||||||
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University of Lyon; France Resource Report Resource Website |
University of Lyon; France (RRID:SCR_010178) | university | University of Lyon, located in Lyon and Saint-Étienne, France, is a center for higher education and research comprising 11 members and 24 associated institutions. | is parent organization of: I3-CRB: Interoperable IT Infrastructure for Biological Resources Centres / Biobanks - France | nlx_30442 | http://www.univ-lyon2.fr/international-/ | SCR_010178 | 2026-08-01 12:03:46 | 0 | ||||||||||
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San Diego State University; California; USA Resource Report Resource Website 1+ mentions |
San Diego State University; California; USA (RRID:SCR_009874) | SDSU | university | Public research university in San Diego, California. Founded in 1897 as San Diego Normal School, it is the third-oldest university in the 23-member California State University system. | is parent organization of: PRINSEQ | nlx_156724, Wikidata:Q913861, ISNI:0000 0001 0790 1491, Crossref funder ID:100007099, grid.263081.e | https://ror.org/0264fdx42 | SCR_009874 | San Diego State University | 2026-08-01 12:03:46 | 1 | ||||||||
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IsoEM Resource Report Resource Website 10+ mentions |
IsoEM (RRID:SCR_009993) | IsoEM | software resource | Software package that can be used to infer isoform and gene expression levels from high-throughput transcriptome sequencing (RNA-Seq) data. | bio.tools |
is listed by: OMICtools is listed by: bio.tools is listed by: Debian has parent organization: University of Connecticut; Connecticut; USA |
biotools:isoem, OMICS_01278 | https://bio.tools/isoem | SCR_009993 | 2026-08-01 12:04:05 | 10 | ||||||||
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Centre for Reviews and Dissemination Resource Report Resource Website 10+ mentions |
Centre for Reviews and Dissemination (RRID:SCR_010267) | CRD | institution | A research department of the University of York provides research-based information about the effects of health and social care interventions via their databases. The institute undertakes systematic reviews evaluating research evidence on health and public health questions of national and international importance. | evidence review, research review, public health, evidence synthesis, FASEB list | is related to: PROSPERO | National Institute for Health Research UK | Public, Available to the research community | nlx_156926 | http://www.york.ac.uk/ | SCR_010267 | University of York Centre for Reviews and Dissemination | 2026-08-01 12:04:07 | 40 | |||||
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Phyre Resource Report Resource Website 500+ mentions |
Phyre (RRID:SCR_010270) | algorithm | A structure prediction system to reliably detect remote homologies. | has parent organization: Imperial College London; London; United Kingdom | PMID:19247286 | nlx_156932 | SCR_010270 | Protein Homology/Anology Recognition Engine | 2026-08-01 12:04:11 | 665 | |||||||||
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BIOBASE Corporation Resource Report Resource Website 100+ mentions |
BIOBASE Corporation (RRID:SCR_010271) | commercial organization | THIS RESOURCE IS OUT OF SERVICE, documented on February 1st,2022. BIOBASE offers academic and non-profit organizations free access to TRANSFAC?? non-professional version with much reduced functionality and content compared to our professional database. | FASEB list |
is related to: Human Gene Mutation Database is parent organization of: Genome Trax is parent organization of: TRANSPATH is parent organization of: Gene Regulation Programs is parent organization of: TRANSCompel is parent organization of: Gene Regulation Databases |
THIS RESOURCE IS OUT OF SERVICE | nlx_156933 | SCR_010271 | 2026-08-01 12:04:07 | 183 | |||||||||
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BitSeq Resource Report Resource Website 10+ mentions |
BitSeq (RRID:SCR_009904) | BitSeq | software resource | A software application for inferring expression levels of individual transcripts from sequencing (RNA-Seq) data and estimating differential expression (DE) between conditions. | bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools |
DOI:10.1093/bioinformatics/btv483 DOI:10.1093/bioinformatics/bts260 |
, OMICS_01269, biotools:bitseq | https://bio.tools/bitseq, https://sources.debian.org/src/bitseq/, | SCR_009904 | 2026-08-01 12:04:11 | 19 | |||||||
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U.S. Department of Labor Resource Report Resource Website 1+ mentions |
U.S. Department of Labor (RRID:SCR_010157) | DOL | institution | Fosters, promotes, and develops the welfare of the wage earners, job seekers, and retirees of the United States; improves working conditions; advances opportunities for profitable employment; and assures work-related benefits and rights. | grid.420412.1, nlx_151864, ISNI: 0000 0001 2097 824X, Wikidata: Q628807, Crossref funder ID: 100000778 | https://ror.org/05mbkbj54 | SCR_010157 | US Dept. of Labor, US DOL, US Department of Labor, United States Department of Labor | 2026-08-01 12:04:11 | 1 | |||||||||
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Johns Hopkins University; Maryland; USA Resource Report Resource Website 10+ mentions |
Johns Hopkins University; Maryland; USA (RRID:SCR_010247) | JHU | university | Johns Hopkins University is private research university in Baltimore, Maryland. Founded in 1876, university was named for its first benefactor, American entrepreneur, abolitionist, and philanthropist Johns Hopkins. | private, university, Baltimore, Maryland |
uses: DIRECT2experts is affiliated with: Diabetes Research Centers is related to: Alzheimers Disease Genetics Consortium is related to: International AMD Genetics Consortium is related to: ABX Guide is related to: Clinical and Translational Science Awards Consortium is parent organization of: SynaptomeDB is parent organization of: Johns Hopkins University School of Medicine; Baltimore, Maryland; USA is parent organization of: sim4cc is parent organization of: MRI Studio is parent organization of: CKID A Prospective Cohort Study of Kidney Disease in Children is parent organization of: Nonalcoholic Steatohepatitis Clinical Research Network is parent organization of: ASprofile is parent organization of: GlimmerHMM is parent organization of: Neurogenetics and Behavior Center is parent organization of: Human Proteinpedia is parent organization of: Schramm Lab Spinal Cord Atlases is parent organization of: NetPath is parent organization of: Academic Drug Discovery Consortium is parent organization of: CardioVascular Research Grid (CVRG) is parent organization of: Johns Hopkins University; Undergraduate Neuroscience Program is parent organization of: Bowtie is parent organization of: FLASH is parent organization of: TMAJ is parent organization of: Gastroparesis Clinical Research Consortium is parent organization of: HPRD - Human Protein Reference Database is parent organization of: Atlweb: Alternatives to Animal Testing is parent organization of: Center for Inherited Disease Research is parent organization of: The Protein Coil Library is parent organization of: HIV Guide is parent organization of: Johns Hopkins School of Medicine Department of Molecular and Comparative Pathobiology is parent organization of: Classic Articles in Visual Perception is parent organization of: Experimental Man Blog is parent organization of: MYC Cancer Gene is parent organization of: JIST: Java Image Science Toolkit is parent organization of: DOTS WM tract segmentation is parent organization of: JHU Proj. in Applied Medical Imaging is parent organization of: LDDMM is parent organization of: Johns Hopkins Bloomberg School of Public Health; Maryland; USA is parent organization of: Genetic Resources Core Facility is parent organization of: LS-SNP/PDB is parent organization of: JHU Deep Sequencing and Microarray Core is parent organization of: Glimmer is parent organization of: Johns Hopkins University Labs and Facilities is parent organization of: CRAVAT is parent organization of: John Hopkins University, In-Vivo Cellular Molecular Imaging Center is parent organization of: RosettaDock is parent organization of: CoGAPS is parent organization of: Blox is parent organization of: National Resource for Quantitative Functional MRI is parent organization of: Myrna is parent organization of: CAWorks is parent organization of: Principal Components Analysis of Scalar, Vector, and Mesh Vertex Data is parent organization of: Longitudinal MS Lesion Imaging Archive is parent organization of: Image Synthesis Tools is parent organization of: Atlases of amygdala and hippocampus for pediatric populations is parent organization of: HISAT2 is parent organization of: neurodata is parent organization of: Johns Hopkins University Integrated Imaging Center Core Facility is parent organization of: Center for Computational Biology at JHU is parent organization of: TopHat is parent organization of: PyRosetta is parent organization of: Ecosystem for Multi-modal Brain-behavior Experimentation and Research is parent organization of: Brain Observatory Storage Service and Database (BossDB) is parent organization of: Johns Hopkins University School of Medicine Genetic Resources Core Facility |
nlx_97251, , Wikidata: Q193727, GRID: grid.21107.35, ISNI: 0000 0001 2171 931, Crossref Funder ID: 100007880 | https://ror.org/00za53h95 | SCR_010247 | 2026-08-01 12:04:06 | 12 | ||||||||
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VassarStats Resource Report Resource Website 500+ mentions |
VassarStats (RRID:SCR_010263) | software resource | Tools for performing statistical computation including: Clinical Research Calculators Probabilities Distributions Frequency Data Proportions Ordinal Data Correlation & Regression t-Tests & Procedures ANOVA ANCOVA | has parent organization: Vassar College; New York; USA | nlx_156916 | SCR_010263 | VassarStats: Website for Statistical Computation | 2026-08-01 12:04:06 | 965 | ||||||||||
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TrueSight Resource Report Resource Website 1+ mentions |
TrueSight (RRID:SCR_009835) | TrueSight | software resource | Self-training Algorithm for Splice Junction Detection using RNA-seq. | is listed by: OMICtools | OMICS_01258 | SCR_009835 | 2026-08-01 12:03:46 | 2 | ||||||||||
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Royal College of Surgeons in Ireland; Dublin; Ireland Resource Report Resource Website |
Royal College of Surgeons in Ireland; Dublin; Ireland (RRID:SCR_009786) | RCSI | university | Private university responsible for the medical speciality of surgery throughout Ireland. |
is related to: Biomedical Diagnostics Institute is parent organization of: Dublin Brain Bank is parent organization of: EPIGEN |
ISNI:0000 0004 0488 7120, grid.4912.e, nlx_143526, Wikidata:Q1124228 | https://ror.org/01hxy9878 | SCR_009786 | Royal College of Surgeons in Ireland | 2026-08-01 12:03:46 | 0 | ||||||||
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Swiss Commission for Technology and Innovation Resource Report Resource Website 1+ mentions |
Swiss Commission for Technology and Innovation (RRID:SCR_010084) | CTI | government granting agency | SCR_010084 | Commission for Technology and Innovation CTI, Commission for Technology and Innovation, Swiss Commission for Technology Innovation, Swiss Commission for Technology and Innovation CTI | 2026-08-01 12:04:05 | 1 | ||||||||||||
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Computational Biology and Functional Genomics Laboratory at Harvard Resource Report Resource Website 100+ mentions |
Computational Biology and Functional Genomics Laboratory at Harvard (RRID:SCR_010240) | software resource | A computational biology laboratory that builds and redistributes genetic software tools. |
has parent organization: Harvard University; Cambridge; United States is parent organization of: GeneSigDB |
nlx_156871 | SCR_010240 | Quackenbush Lab | 2026-08-01 12:04:06 | 221 | ||||||||||
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ABMapper Resource Report Resource Website 1+ mentions |
ABMapper (RRID:SCR_010242) | ABMapper | software resource | A portable, easy-to-use package for spliced alignment, junction site detection, and reads mapping. The core module was written in C++ and wrapped in PERL scripts. | is listed by: OMICtools | OMICS_01238 | SCR_010242 | ABMapper: A suffix-array based spliced alignment tool | 2026-08-01 12:03:47 | 1 | |||||||||
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National Science Foundation Graduate Research Fellowship Program Resource Report Resource Website 100+ mentions |
National Science Foundation Graduate Research Fellowship Program (RRID:SCR_001487) | graduate program resource, funding resource | The National Science Foundation's Graduate Research Fellowship Program (GRFP) helps ensure the vitality of the human resource base of science and engineering in the United States and reinforces its diversity. The program recognizes and supports outstanding graduate students in NSF-supported science, technology, engineering, and mathematics disciplines who are pursuing research-based master's and doctoral degrees in the U.S. and abroad. The NSF welcomes applications from all qualified students and strongly encourages under-represented populations, including women, under-represented racial and ethnic minorities, and persons with disabilities, to apply for this fellowship. Fellows share in the prestige and opportunities that become available when they are selected. Fellows benefit from a three-year annual stipend of $30,000 along with a $10,500 cost of education allowance for tuition and fees, a one-time $1,000 international travel allowance and the freedom to conduct their own research at any accredited U.S., or foreign institution of graduate education they choose. NSF Fellows are anticipated to become knowledge experts who can contribute significantly to research, teaching, and innovations in science and engineering. So that the nation can build fully upon the strength and creativity of a diverse society, the Foundation welcomes applications from all qualified individuals. Women, under-represented minorites and people with disabilities are encouraged to apply. Those with disabilities are additionally accommodated by the Foundation to provide for the most successful graduate experience possible. Sponsors: This program is supported by the National Science Foundation (NSF). | engineering, fellowship, graduate, human, mathematics, research, science, technology | Free, Freely available | nif-0000-10366 | SCR_001487 | NSF GRFP | 2026-08-01 12:09:04 | 155 |
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